Protein Info for MIT1002_00994 in Alteromonas macleodii MIT1002

Annotation: Spore protein SP21

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 PF00011: HSP20" amino acids 61 to 164 (104 residues), 87.9 bits, see alignment E=4.2e-29 PF17886: ArsA_HSP20" amino acids 67 to 146 (80 residues), 31.8 bits, see alignment E=8.3e-12

Best Hits

KEGG orthology group: K13993, HSP20 family protein (inferred from 67% identity to pat:Patl_3582)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (165 amino acids)

>MIT1002_00994 Spore protein SP21 (Alteromonas macleodii MIT1002)
MSNLPITNRSSDSKSNSFLSSFFGQKALDNFFQDFSSHFPFSKESSGLIDTKLDFVTPKV
DIVERKKSYELTAELPGLESKDIKLSLSDDILTISGEKKYESDEDKEDNIHVMERSYGSF
QRSFRLPVSVEQDAITANFKKGVLKILLPKSAKAQELQRKIEITD