Protein Info for MIT1002_00920 in Alteromonas macleodii MIT1002

Annotation: putative ABC transporter ATP-binding protein YbhF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 910 transmembrane" amino acids 559 to 580 (22 residues), see Phobius details amino acids 713 to 738 (26 residues), see Phobius details amino acids 765 to 788 (24 residues), see Phobius details amino acids 794 to 817 (24 residues), see Phobius details amino acids 823 to 845 (23 residues), see Phobius details amino acids 885 to 905 (21 residues), see Phobius details PF00005: ABC_tran" amino acids 21 to 168 (148 residues), 95.9 bits, see alignment E=8.5e-31 amino acids 285 to 429 (145 residues), 104.6 bits, see alignment E=1.7e-33 PF13304: AAA_21" amino acids 135 to 198 (64 residues), 29.4 bits, see alignment 2e-10 amino acids 403 to 459 (57 residues), 27.9 bits, see alignment 5.6e-10 PF12679: ABC2_membrane_2" amino acids 565 to 908 (344 residues), 39.9 bits, see alignment E=8e-14 PF12698: ABC2_membrane_3" amino acids 567 to 902 (336 residues), 139 bits, see alignment E=5.5e-44 PF01061: ABC2_membrane" amino acids 703 to 874 (172 residues), 64.2 bits, see alignment E=3.2e-21

Best Hits

KEGG orthology group: K13926, ribosome-dependent ATPase (inferred from 62% identity to bav:BAV1814)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (910 amino acids)

>MIT1002_00920 putative ABC transporter ATP-binding protein YbhF (Alteromonas macleodii MIT1002)
MGNIIECNSLTVRYKSTTAIHNLALSIPAGLTVGVIGPDGVGKSTLLSLIAGERVMQKGQ
LQVLGGDMRDEKHRAAICSDIAYMPQGLGKNLYPTLSVEENLQFFAKLFGHNRAQRRARI
DILTKRTGLYPFLSRPAGKLSGGMKQKLGLCCALIHDPRLLILDEPTTGVDPLARSQFWS
LIKDIRKTQPNITVLVATAYMDEAQQFDHLLALNAGEILASGSPRSLLSETQTSNLEAAF
IALLPADAKHEHRSVVVQPYKASEHMQTAIEAKNLTMKFGDFTAVNNVSFTIGKGEIFGF
LGSNGCGKSTTMKMLTGLLPQTSGEAWLLGSPLVANDINTRYRVGYMSQSFSLYTELTVR
QNLTLHAKLFKVASSVLNSRVDEMLNRFALSHHQHSLPNDLPLGIRQRLSLAVAMVHRPE
VLILDEPTSGVDPVARDNFWQLLISLARKDGVTIFISTHFMNEAVRCDRISLMHAGEVLV
TDTPQAIKASKSADTLEQAFIDYLVEAQTPENQTQNTEQSAPEGVSADKATPPNKRAKGL
RRLLSYASRETLELIRDPIRLTMSFLGSMVLMVVIGYGITMDVDDLSYAVFDRDQTSTSL
NYRNALSGSRYFNEQPVITSYADMDRRMKSGELSLAVEIPPEFSQKLHKGEQVEIGAWID
GAMPSRAETIQGYVTGIHLKWLLQQASQASQVQSTSSINVESRYLYNPDVRSLVAIVPAV
MPMLLLMIPALLTSLAVVREKELGSIINLYVTPVTRIEFLLGKQLPYIATSFVSFLLLVA
MAVWLFNIPLKGDVIVLCLITLLFVTFSTSFGLLASVFTNSQIAAILLTTIGTMVPAIQF
AGMITPVSALEGAGRVIGELHPISYFLTASRGIFSKGLGFETLDFAVFAIAISIPITLWL
ATVLLRKQER