Protein Info for MIT1002_00874 in Alteromonas macleodii MIT1002

Annotation: Phosphate transport system permease protein PstC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 725 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 431 to 453 (23 residues), see Phobius details amino acids 465 to 485 (21 residues), see Phobius details amino acids 491 to 512 (22 residues), see Phobius details amino acids 527 to 545 (19 residues), see Phobius details amino acids 547 to 558 (12 residues), see Phobius details amino acids 575 to 595 (21 residues), see Phobius details amino acids 620 to 642 (23 residues), see Phobius details amino acids 650 to 666 (17 residues), see Phobius details amino acids 690 to 711 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 443 to 719 (277 residues), 55.2 bits, see alignment E=3.8e-19

Best Hits

KEGG orthology group: K02037, phosphate transport system permease protein (inferred from 84% identity to amc:MADE_03151)

Predicted SEED Role

"Phosphate transport system permease protein PstC (TC 3.A.1.7.1)" in subsystem High affinity phosphate transporter and control of PHO regulon or Phosphate metabolism (TC 3.A.1.7.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (725 amino acids)

>MIT1002_00874 Phosphate transport system permease protein PstC (Alteromonas macleodii MIT1002)
MTFDSNSTNKKRQRSDRWSRYVVTGFGGLVLLTLVILITHLISQALPLAYTPSLNHLLSL
KTSDNEKIISAGDIINSQPMLVRKSDCRLGLKLLKGDALVSNHDYIRPCEHRLSSHSVMG
ENYIVDVSPNAQVRVLPVRSFNMTDGSAEDIATSTPQAALSNSITFALPKGEWEIRSDWS
IALSSKWAVVSIVQDNKVFIRWVNRLRPTQVVDKRFHNIDRLVLLPGSQSVLLQVDDALY
LNRLTDEGASLLPIAGNITASLDEKIVFPLAKDRTFFLMNSNTQALTRWVLSKSDKGLTF
EQTYQVALPGENVKDVAEHASMNLVAVLTDKARVLLVNRVSGDVVASQQIERSAENIIWY
GNKLYGYSDSTLSVWEGRHLSGVTTWASLFEPQHYEGYETEETVWQTTSASDFQEAKFSL
TPLLIGSIKASLLALLIAIPVAIGAAIYTAFFAKSRLRNVIKPAIELLEAIPSVLIGFIA
AIWLSPKAEQFLFSFAFFLIVIPFVLIVVALVQRPVAEYLPKKLRHGAELLFAISGVFLL
GFISVEYAPSLIFSIMGGDGFTMLAAESDSPIGKTTIVVALALGVAISPSIYSLAEDAIN
GVPNDLKHASFALGATRLQTLLHVVLHVALPGIVAAIMLGFGRAFGETMIVLMVTGNTPI
SSWGLIEGLRALTANLAIELPEADVSSAHYQILFFTACILFLFTFLVNTMAELLRQRIRS
RAYYG