Protein Info for MIT1002_00687 in Alteromonas macleodii MIT1002

Annotation: ribosomal-protein-S5-alanine N-acetyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 172 PF13302: Acetyltransf_3" amino acids 13 to 150 (138 residues), 81.6 bits, see alignment E=9.1e-27 PF00583: Acetyltransf_1" amino acids 64 to 149 (86 residues), 37.2 bits, see alignment E=3.1e-13

Best Hits

KEGG orthology group: None (inferred from 79% identity to amc:MADE_03674)

Predicted SEED Role

"N-acetylglutamate synthase (EC 2.3.1.1)" in subsystem Arginine Biosynthesis extended (EC 2.3.1.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.3.1.1

Use Curated BLAST to search for 2.3.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (172 amino acids)

>MIT1002_00687 ribosomal-protein-S5-alanine N-acetyltransferase (Alteromonas macleodii MIT1002)
MNTNTAIFTNDKITLRPLTFDDKHWVLALQQDPLWLRYIGSKNVDTVDDACDYIGKTNAQ
REEWGYGLLAVELTETKQPLGVCGLFNRFAFECPDLGFAMLPEARGKGICYEACQCVIAW
SASEGYRFLTAMTHPENMASQKLLQRLGFNKQGFYFDKTFPKQHLFRLELQP