Protein Info for MIT1002_00633 in Alteromonas macleodii MIT1002

Annotation: putative protein involved in outer membrane biogenesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 transmembrane" amino acids 10 to 30 (21 residues), see Phobius details TIGR03545: TIGR03545 family protein" amino acids 14 to 521 (508 residues), 342.1 bits, see alignment E=2.9e-106

Best Hits

KEGG orthology group: None (inferred from 92% identity to amc:MADE_03719)

Predicted SEED Role

"uncharacterized conserved secreted protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (571 amino acids)

>MIT1002_00633 putative protein involved in outer membrane biogenesis (Alteromonas macleodii MIT1002)
MSSGSKGKPILLWVVGFFVLLFLVYFLFANTIIKSILESKLGESYGAEVNIDEFDHSLFP
TTVTLKGIALTNPTKPTHNQVFVGEAHADVELKPLLDDQVIVNNLDLLKVQFDTQRESEG
EVYRVPERSLSFDEIKAKAKEAVPTVDELLARNPLKTTAAIENAKSAYETYGKGLKDDYE
SLPDKSRIEYYKTQVAQLKETNYKDPQALVQAKSSFDKLKEEMQADRALISNFTEKASDA
KQALSESVEALKKAPQEDYALLKGVIAGDQAALSQVTYFVFGDKAAEYTEYLMAAMQIVM
PLIQGEEKSEAPTEVPSILVKEANVSVLWQNESITSKWNNITNVHEVFGNPTTFTIEAAG
ELLKSFTSSGEFWIDGNGVDASQVWQLAGVNMSNISFSGNETLNAVLKSALMKTNGSMKV
TDNMLTGTGEVDLQQLVMEATGTSDITSAIAQALQTLTSLNMTMLLDGTLSDPGFNIKSD
LDNKLAKAALSQLTASQKDKLDELNNKLNSMISNEQSLLSGELVDVNSMLSAAQGDSAAL
QELLQAQLNNVVEQQKSKLFDKLKGKLGQGE