Protein Info for MIT1002_00627 in Alteromonas macleodii MIT1002

Annotation: Inner membrane protein YqaA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 transmembrane" amino acids 20 to 37 (18 residues), see Phobius details amino acids 57 to 80 (24 residues), see Phobius details amino acids 107 to 125 (19 residues), see Phobius details amino acids 131 to 132 (2 residues), see Phobius details amino acids 134 to 160 (27 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details PF09335: SNARE_assoc" amino acids 39 to 158 (120 residues), 53.2 bits, see alignment E=2.1e-18

Best Hits

Swiss-Prot: 54% identical to Y703_HISSO: Uncharacterized protein HI0703 homolog from Histophilus somni

KEGG orthology group: None (inferred from 93% identity to amc:MADE_03725)

Predicted SEED Role

"FIG139438: lipoprotein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (192 amino acids)

>MIT1002_00627 Inner membrane protein YqaA (Alteromonas macleodii MIT1002)
MKLFEPCYDMALRWARHRHATKYLGGLSFSESVFFPIPPDVMLAPMALSQPARAWQFAFI
TTIASILGGIAGYWLGYFAFDAWLAPLIESWGYTHKIDTAMQWFKDYGVWVVFLAGFSPI
PYKIFTVSAGFLQMAFLPFVLASAVGRGARFFLVAALMRWGGAAMEQKLRQYVEVLGWGV
VILAIFAYLLLR