Protein Info for MIT1002_00341 in Alteromonas macleodii MIT1002

Annotation: glutaredoxin 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 transmembrane" amino acids 89 to 109 (21 residues), see Phobius details amino acids 115 to 133 (19 residues), see Phobius details amino acids 146 to 166 (21 residues), see Phobius details amino acids 169 to 176 (8 residues), see Phobius details amino acids 178 to 201 (24 residues), see Phobius details amino acids 220 to 241 (22 residues), see Phobius details PF07291: MauE" amino acids 118 to 241 (124 residues), 34 bits, see alignment E=1.7e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to amc:MADE_00406)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (243 amino acids)

>MIT1002_00341 glutaredoxin 3 (Alteromonas macleodii MIT1002)
MSKKAILYRMVTKEHICPYGLRSKDLLEREGYSVEDNHLTSRNDTDDFKQKHGVETTPQT
FIEEKRVGGYDELRKYFGKGEAGQNGTTYAPVIAIFSVAALLSLAFQFFVSEDFISIRTL
VLFIAFSMTLLAVQKLKDLYSFTNSFITYDLLAMRWLRYGYIYPFLEAYAGIGMVAQLPA
IAVAPFSLFIGTVGAISVFKAVYVDKRELKCACVGGDSNVPLGFVSLSENIFMIAGALLM
LSF