Protein Info for MIT1002_00165 in Alteromonas macleodii MIT1002

Annotation: Multiple sugar-binding protein precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF01547: SBP_bac_1" amino acids 41 to 329 (289 residues), 123.5 bits, see alignment E=1.9e-39 PF13416: SBP_bac_8" amino acids 48 to 331 (284 residues), 59.3 bits, see alignment E=5.5e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (413 amino acids)

>MIT1002_00165 Multiple sugar-binding protein precursor (Alteromonas macleodii MIT1002)
MRAIYGLYPFCLTVFLAMLALPSKAETLTVGWLNDNVNERYLISDIEQEFAKIAPDITLN
AVGVHTDKYKQQVLKWLKTGEGPDVLYWYGDERLLDLVRSGWVSDISDIWQAQRLTDAFR
VSVSSQVSLNGRFYAIPVSHYPWSFFYNAELFDSLGLAAPNTWDEFLRLCQALKEKGITP
IAIGYDAPWVLTSWFEFISLRLYGESFHHELLSGSVSYKDERVVQVFLLWKVLIDKGYFM
DTGENMDWYDPMPYLYRGLAGVTLIGHFLSSRIPESAESKIRIFSFPELSPGQETIELAP
LDVFFVRASSSKQKAARQFLSFMATHKAQSRFNLHAGGFSPLAGSEHFPNYFNDMGAKQL
NTAESTSPYFDRVVPHEFAEPAMTLLRDFMKSADVGSTTEALEALRLEVYQLD