Protein Info for LU632_RS26110 in Erwinia tracheiphila SCR3

Annotation: ParA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 PF09140: MipZ" amino acids 2 to 56 (55 residues), 28.5 bits, see alignment E=2.4e-10 PF13614: AAA_31" amino acids 2 to 49 (48 residues), 32.5 bits, see alignment 2e-11 PF10609: ParA" amino acids 2 to 51 (50 residues), 33.2 bits, see alignment E=9.4e-12 PF01656: CbiA" amino acids 3 to 178 (176 residues), 49.6 bits, see alignment E=9.7e-17

Best Hits

KEGG orthology group: K03496, chromosome partitioning protein (inferred from 41% identity to rsq:Rsph17025_4402)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (207 amino acids)

>LU632_RS26110 ParA family protein (Erwinia tracheiphila SCR3)
MIISVVSQKGGVGKSSLARTLAVEFTRAGWRVLLADTDYGQATSNRWNENRRQQAELKPE
VNGQTFPSTHQALLEAANYDLVVIDGAPHATHGTQEAAAHSDLVIIPTGSSLDDLEPGIL
LGNELAKSENSKIAFVLIRTTSTKQEREARETLEGYGFDVLPGEIPMKTGYITALDSGRA
LTETEYPTLNKHAMDIVNHIALKVNPE