Protein Info for LU632_RS24110 in Erwinia tracheiphila SCR3

Name: rarD
Annotation: EamA family transporter RarD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 42 to 61 (20 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 104 to 121 (18 residues), see Phobius details amino acids 128 to 145 (18 residues), see Phobius details amino acids 151 to 167 (17 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 210 to 232 (23 residues), see Phobius details amino acids 242 to 262 (21 residues), see Phobius details amino acids 273 to 291 (19 residues), see Phobius details TIGR00688: protein RarD" amino acids 8 to 261 (254 residues), 314.8 bits, see alignment E=2.1e-98 PF00892: EamA" amino acids 9 to 142 (134 residues), 55.2 bits, see alignment E=4.4e-19 amino acids 152 to 284 (133 residues), 27.8 bits, see alignment E=1.3e-10

Best Hits

Swiss-Prot: 71% identical to RARD_ECOLI: Protein RarD (rarD) from Escherichia coli (strain K12)

KEGG orthology group: K05786, chloramphenicol-sensitive protein RarD (inferred from 84% identity to ebi:EbC_02180)

Predicted SEED Role

"Protein rarD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (300 amino acids)

>LU632_RS24110 EamA family transporter RarD (Erwinia tracheiphila SCR3)
MDAQQTRQGIFFALAAYVIWGIAPTYFKLIQQVNAGEIMTHRVIWSFFFMLILVCLTRNW
PQVRLVIRQPKKVLLLAVSATVICTNWLIFIWAVNNHHMLEASLGYFINPLFNVVVGMVV
LGERFRRLQWLAVALATCGVLVQLWKFGSVPIIALALAITFSIYGLLRKKIGVDAKTGML
IETSWLLPAAAIYLFGIADSSTSHLSQNPLSLNLLLFAAGIITTIPLMFFTAACARLRLS
TVGFFQYLGPTLMFLLAVVFYGEQMTSDKAMTFSFIWAALALFIFDALYTLRRSRRQPSL