Protein Info for LU632_RS21835 in Erwinia tracheiphila SCR3

Name: tnpA
Annotation: IS200/IS605 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 PF01797: Y1_Tnp" amino acids 12 to 130 (119 residues), 109.8 bits, see alignment E=4.8e-36

Best Hits

KEGG orthology group: K07491, putative transposase (inferred from 69% identity to swd:Swoo_2752)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (136 amino acids)

>LU632_RS21835 IS200/IS605 family transposase (Erwinia tracheiphila SCR3)
MSRFQKASHVLWCCQYHIVWTPRYRFRILRNNVGKEVCKPIRISGEQPGIEVVELNVQTD
HVHLRVKVPSRLSISHVTGDLKGKTALRLFSKFPCLRKNKQWGNDFWARGYCVDTVGINE
EMIIKYVKYQEKHEVE