Protein Info for LU632_RS10725 in Erwinia tracheiphila SCR3
Name: lolB
Annotation: lipoprotein insertase outer membrane protein LolB
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 70% identical to LOLB_ERWT9: Outer-membrane lipoprotein LolB (lolB) from Erwinia tasmaniensis (strain DSM 17950 / CIP 109463 / Et1/99)
KEGG orthology group: K02494, outer membrane lipoprotein LolB (inferred from 77% identity to ebi:EbC_18260)MetaCyc: 65% identical to outer membrane lipoprotein LolB (Escherichia coli K-12 substr. MG1655)
RXN-22553
Predicted SEED Role
"Outer membrane lipoprotein LolB precursor"
MetaCyc Pathways
- lipoprotein posttranslational modification (Gram-negative bacteria) (6/7 steps found)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (207 amino acids)
>LU632_RS10725 lipoprotein insertase outer membrane protein LolB (Erwinia tracheiphila SCR3) MFIQKHRLMRFLPLAGLLLAACSINKPQGPGQSIHSPQWQQYQKQVQKITQYQTRGAFAY LSDSQKMYARFNWQQTAPDRYRLLLTNPLGITELQLDAQGSVVQIVDSKGKRYVSNDAEK MIAQLTGMAIPLTNLRQWIMGLPGDATDYSLDDQYRLREVRYTQDNRQWTVNYLSYDSGQ NPVLPASLELREGSQRIKLKMDSWTVK