Protein Info for LU632_RS08170 in Erwinia tracheiphila SCR3

Name: rcsC
Annotation: two-component system sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 951 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 207 to 227 (21 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details PF00512: HisKA" amino acids 471 to 535 (65 residues), 62.7 bits, see alignment 5.5e-21 PF02518: HATPase_c" amino acids 582 to 692 (111 residues), 104.3 bits, see alignment E=1e-33 PF09456: RcsC" amino acids 710 to 801 (92 residues), 85.1 bits, see alignment E=5e-28 PF00072: Response_reg" amino acids 829 to 937 (109 residues), 105 bits, see alignment E=5e-34

Best Hits

Predicted SEED Role

"Two-component sensor protein RcsC (EC 2.7.3.-)" (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (951 amino acids)

>LU632_RS08170 two-component system sensor histidine kinase RcsC (Erwinia tracheiphila SCR3)
MKYLVSFRTTLRISRYLFRALALMLWTLGALLTTFYIINVVHEKEVQVRQEFNANVEQVQ
WYMTHAADVTRELKFIAENRLNASANGLDVLNGMFPGKTTLPQFYPLYSDSDCSIMSNTW
RNSLESLSYFLRYWKDNFSSAYELNRVFFIGGESLCLADFGVGSASAERGHVLKSLQEHI
LKYRNANDDERKNSIFWVVSSGQPGVGYYYMLTPVYVVSRMAALLGIEQSIRLDDFIAPG
SFPMSAILLDANNQRIMSSSRSGECISLEDLPDESDWFGYINGYKQLVLKKTLMPASLTI
VYSVETSDMVEKLKMLIINAVLLNLISAIFLFTLALLFERRMFLPAEENAQRLEEHEQFN
RKIVASAPVGICILRTSDGTNILSNELAHNYLSMLTQEDRQRLTEIISGQQVNFVDVLTG
SNTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQEMAHAAEQASQSKSMFLATVSH
ELRTPLYGIIGNLDLLQTKSLPKGVDSLVTAMNNSSSLLLKIISDILDFSKIESEQLRIE
PREFSPREVITHITSSYLAMVVKKRLTLWCFIDGDVPVTLEGDPIRLQQVISNLLNNAIK
FTHTGGIMLQSYVKDGYLVFCVRDTGVGIPAKEIPRLFDPFFQVGSGVQRNFHGTGLGLA
ICEKLINMMDGDIEVDSEPGMGSQFTVRIPLYNSYTLPPVLHEGLLGRKCWLELRNDTLA
TFLQKLLQQHGVTVLRLGEDAHCDADDIIVTDYDFHPPQRVRGIIRFDGSHNDGPLEIIN
GRWIYGTTTPHELPALLGRIFRVEVSMHDLPFCLREVEEPVISNEDILILVVDDHPINRM
LLSDQLGTLGYRVKTAHDGVDALNVLSRHEFDIVLTDVNMPNMDGYHLTQRLRQLGLTFP
VIGVTANALAEEKQRCMEAGMDNCLSKPVTLDTLQQTLVFYADSVRKGREG