Protein Info for LU632_RS06835 in Erwinia tracheiphila SCR3

Annotation: DUF4225 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 45 to 68 (24 residues), see Phobius details amino acids 109 to 126 (18 residues), see Phobius details PF13988: DUF4225" amino acids 1 to 151 (151 residues), 159.8 bits, see alignment E=2.1e-51

Best Hits

KEGG orthology group: None (inferred from 38% identity to ypz:YPZ3_3472)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (175 amino acids)

>LU632_RS06835 DUF4225 domain-containing protein (Erwinia tracheiphila SCR3)
MLRAGTAAVHASVQLVKNGDFWGYVINGVGVVLSGMQVIAGVSVIGASLATGTIIGSAFG
GMLVLHGLNGFQESVENLVYGKTDSVGLLKQGYVATAEFLGFDQRVGQLAYSSMDLALSV
YGIVRLVQKPEAWRLYYFLNTDYVRGIKEMSRKELFIEVYNDASAIKSISDTYKE