Protein Info for LU632_RS04845 in Erwinia tracheiphila SCR3

Annotation: TIGR03751 family conjugal transfer lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR03751: conjugative transfer region lipoprotein, TIGR03751 family" amino acids 10 to 131 (122 residues), 182 bits, see alignment E=2.8e-58

Best Hits

KEGG orthology group: None (inferred from 83% identity to enc:ECL_00443)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (134 amino acids)

>LU632_RS04845 TIGR03751 family conjugal transfer lipoprotein (Erwinia tracheiphila SCR3)
MNRYKLLATLLLAVTLAGCSTSKDEMLPPGDSSMLDMWNDGASVTHTTTESRATLSRPVS
DGERVISQQTRESYSRTQENEIQQTFPRLPNPDMVMYVYPHLADGSTPVPGYSTVFPFYS
QVQYALPGERTEDL