Protein Info for LU632_RS03790 in Erwinia tracheiphila SCR3

Name: tssM
Annotation: type VI secretion system membrane subunit TssM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1207 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 50 to 69 (20 residues), see Phobius details amino acids 472 to 493 (22 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 15 to 1207 (1193 residues), 1109.6 bits, see alignment E=0 PF14331: IcmF-related_N" amino acids 207 to 480 (274 residues), 289.8 bits, see alignment E=2.7e-90 PF06761: IcmF-related" amino acids 532 to 833 (302 residues), 269 bits, see alignment E=9.5e-84 PF06744: IcmF_C" amino acids 1090 to 1194 (105 residues), 79.3 bits, see alignment E=3.5e-26

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 87% identity to ebi:EbC_05800)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1207 amino acids)

>LU632_RS03790 type VI secretion system membrane subunit TssM (Erwinia tracheiphila SCR3)
MMNILFAIMTNRLLWGFVGITALSFIIWVIGPVFSIVDSRPLEPEVNRQISIVLLYIAWG
LSNLVPRLYNAWLNRKLMGSLKNDTNASGNPDRKRLTNEDRVLSERFTEAAEMLKKAHFS
RAGNHRWMQRFSRQYLYQLPWYVIIGAPGAGKTTALVNSGLQFPLADRFGKAALRGIGGT
RNCDWWFTNEAVLLDTAGRYTTQESEQQQDASEWNNFVGLLRKYRGRQPINGVIVTVSVS
DLLTQSAQTSREQALSLRQRLMELHEQLGIRFPVYVMVTKTDLLKGFLAYFAKFDKAQRD
QVWGFTFPWERSKQADFDLQSAFIQEYALLQQRLDAGLPDTLLQESDAKARAESFLFPQE
FAALRPLLADYLDTVFARSNFETQFSPRGIYFASGIQEGLPFDRVMGELNRALLLPQDEA
GSSGSWDNVNKESPIPANKGQSFFLKDLLQNVIFKEAGLAGSNRWWELRNRAVLWSGYIA
LVVGLVIAGLLWITSFGNNKSYLAEVQNKVPKVTDLSKDLQVNNLTDLYALLPFLNGVLT
LPESDDFDINHPPITRRMGLYRGGEVSDASMTLYQKSLKQLLMPQVAMLIATWLRNDNGS
DADYSYEALKAYQMLYQPKHYDGKFLHAWVVLNIQRNPPQNVTSAQIKQLDWHLMQLLET
QIQASPYARDDALVKREQALINQVPLSQRVYGRLKRLLERDDSLRPVSLASLGGPQSELV
FSRKSGKSIGDGIPGLFTPEGYWGSFDKNIEAVTASLHDDDQWVLGGQTQSENKQQTDLA
VRQLYMADYMRQWDGLLQDITLNSSADLSQRINAARLLSGSNSPLRKLVINLSHYLVLDK
AELAEEKGQDKKEGASASSASNTLQALFHANQAITAASQQQQTPEKSVTAHFAPIIELAQ
PLEKGGKTIAFDDFLRQIDDLYRYLTAVQDAANSGMPPPAGDSISRLQASAGRLPGSLQN
MFTSMAVGASSDTRQRDLDNVRKRINVEVGSFCRQAIAGRYPLSRSGRTEVTPDDLARMF
APGTGLMDSFFRDNLANKVDTTQTSWRFTPGIDGKTLAGGESVLRPFQQAQSIRDAFFAN
GATTPSFRVTVRTRQIDNDILTMTLDVDGQQLRYSHGPPAVQLVSWPGPGGTSQVRMQLG
LADGTSATLVTDGAWALNHFFDNARLSPGSSALSRQADFNVNGHHVTLEFTPNSIRNPFQ
LPGFSCP