Protein Info for LU632_RS01935 in Erwinia tracheiphila SCR3

Name: mscM
Annotation: miniconductance mechanosensitive channel MscM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1111 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 432 to 450 (19 residues), see Phobius details amino acids 457 to 474 (18 residues), see Phobius details amino acids 480 to 498 (19 residues), see Phobius details amino acids 521 to 543 (23 residues), see Phobius details amino acids 555 to 580 (26 residues), see Phobius details amino acids 601 to 621 (21 residues), see Phobius details amino acids 633 to 652 (20 residues), see Phobius details amino acids 673 to 696 (24 residues), see Phobius details amino acids 702 to 722 (21 residues), see Phobius details amino acids 789 to 810 (22 residues), see Phobius details amino acids 832 to 852 (21 residues), see Phobius details amino acids 873 to 898 (26 residues), see Phobius details amino acids 906 to 933 (28 residues), see Phobius details PF12795: MscS_porin" amino acids 33 to 259 (227 residues), 179.4 bits, see alignment E=2.4e-56 PF12794: MscS_TM" amino acids 482 to 818 (337 residues), 352.3 bits, see alignment E=6.1e-109 PF21088: MS_channel_1st" amino acids 879 to 920 (42 residues), 43 bits, see alignment (E = 8.5e-15) PF00924: MS_channel_2nd" amino acids 922 to 987 (66 residues), 86.7 bits, see alignment 2.3e-28 PF21082: MS_channel_3rd" amino acids 995 to 1078 (84 residues), 33.6 bits, see alignment 1.1e-11

Best Hits

Swiss-Prot: 68% identical to MSCM_ECOLI: Miniconductance mechanosensitive channel MscM (mscM) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 80% identity to ebi:EbC_04420)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1111 amino acids)

>LU632_RS01935 miniconductance mechanosensitive channel MscM (Erwinia tracheiphila SCR3)
MLRLILVILMSWALAQLPGAIAAPGAAQLRQTLEETKSNKDTPDQAEIIESLQSALNWLD
EQQKSESNTRDYQLIINNFPKISRELRQQIAGLGDTAEKIRVDMTAAELDQQILQISSQL
LEEGRQAQQEQDHIREISDSLAQLPQQQTEARRALNEIERRLQGQPAATTSLAQAQLAAR
QAESAARKVQVDELELAQLSASNRQELARMRSDYHQRKASQLDDTLQQLRYQLNSQRQQE
AERALEKTEQLAENSGDLPENIRKQFSINRELSEALNQQAQQMSLVVSQQRTAVDQTIQV
RQALDTLREQAQWISVSSVLGEALRAQVARLPEMPKSQQLNIEMGQLRVQRLHYEDILER
QKQLLQLKQDDSSPLSDEQRSILAAQLKTQRELVGSLLAGSDNLILEVTKLKVANGQLVE
ALKEVREATHRYLFWAADVSPLSFIFPLDLMRDLKTLLSLDTLGQLGGALVMMATSQETL
LPIIGAMLLVVLSLSSRRHYHDFLNRSASKVGKVTQDKFALTARTVFWSILVALPLPVLW
MALGYGLQHAWPYPIAVAIGDGVTATVPLLWAFMISAAFARQKGLFIVHFRWQQNRVARA
MRFYSLCVGFVVPLIMLLISLDNMEDRQFSATLGRLCFILICSALSLVSVSLKRAGIPLY
LDKEGNGQNIISNILWNVLIAIPLAAALASCIGFLATSQALLARLETSVAIWFLLLVIYH
IIRRWMLIQRRRIAFDRARARRADILAQRAKGEEDIQSAQHSSETPDMDEPVIDLDTISA
QSLRLVRSILTLIALVSVIVLWSEIHSAFGFLENINLWDVSTTVKGVESLQPITLGSVLI
AILVLIITTQLVRNMPALLELALLQHLNLTPGTGYAITTVTKYLLILFGGLMGFSMIGID
WSKLQWLVAALGVGLGFGLQEIFANFISGLMILFEKPIRIGDTVTIRDLTGSVTRINTRA
TTITDWDRKEIIVPNKAFITEQFVNWSLSDSITRVVLTIPAAAEANSEEVTQILLTAAQR
CPLVLDVPPPEAWLVDLQQGIQLFELRIHAAEMGHRMPLRHDIHQLILLGYQQHGLEMPF
PPFQVRMETMGRKTSSTDGNTTARNYKSGGL