Protein Info for LRK53_RS18675 in Rhodanobacter sp000427505 FW510-R12

Annotation: DNA polymerase Y family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 461 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

"DNA polymerase-like protein PA0670" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (461 amino acids)

>LRK53_RS18675 DNA polymerase Y family protein (Rhodanobacter sp000427505 FW510-R12)
MLWLACQFPSLALEVPAGPADVARVAVDGTVRQACPLATAAGVRPGMRVTTARALVTPLD
VRVTDASLRSGALADLAPRLATITSQVVLVPEGDTLLGEVGASQRMLGGLAGVRRAARAA
FADTGVTWRAAIAPTPAAAAVLAMHRPGTTVVGMPDLRSALSDLPATALPLPAAAHQLLR
RIGVHDVGEVLALPRAGLARRLGVPAVSMLERLLGERPDPRESWVPPARFVREAEWDDPL
ASVEALQFPLRRLLGDLAAYVACRGERATAWSLVLRTDDRREAVLTVAAAAGTADPHQLQ
VLTVERAAGTPWPGPVVGLQLRLEATREAPGPAMLFAQDGDEQLVALLDRLRARLGHDAV
YGLAPVADPRPERTQRRVLIGDDGAAVVSPRRRPAWLLPSPQPWRCDPARLIAGPERMES
GWWDGADSRRDYWVARGDAGATWWVYQDLRTSNWFVHGWFG