Protein Info for LRK53_RS18615 in Rhodanobacter sp000427505 FW510-R12

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1044 transmembrane" amino acids 21 to 38 (18 residues), see Phobius details amino acids 346 to 364 (19 residues), see Phobius details amino acids 371 to 392 (22 residues), see Phobius details amino acids 398 to 420 (23 residues), see Phobius details amino acids 450 to 473 (24 residues), see Phobius details amino acids 481 to 506 (26 residues), see Phobius details amino acids 537 to 559 (23 residues), see Phobius details amino acids 870 to 889 (20 residues), see Phobius details amino acids 895 to 915 (21 residues), see Phobius details amino acids 920 to 940 (21 residues), see Phobius details amino acids 972 to 990 (19 residues), see Phobius details amino acids 1002 to 1025 (24 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 9 to 1025 (1017 residues), 711.1 bits, see alignment E=1.2e-217 PF00873: ACR_tran" amino acids 12 to 1024 (1013 residues), 829.8 bits, see alignment E=4.8e-253 PF03176: MMPL" amino acids 338 to 508 (171 residues), 22.6 bits, see alignment E=7.2e-09 PF02355: SecD_SecF_C" amino acids 350 to 497 (148 residues), 23.2 bits, see alignment E=6e-09

Best Hits

KEGG orthology group: None (inferred from 59% identity to bra:BRADO6304)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1044 amino acids)

>LRK53_RS18615 efflux RND transporter permease subunit (Rhodanobacter sp000427505 FW510-R12)
MRQDAPGLLAAIVRFSLRFRGVVLVLAGILIVYGTLTLSRSKYDVFPEFAPPQVSIQTEA
PGLAPEQVEVLATQPIENAINGLPGLQALRSQSIQGLSVITITFNPGSDIYRDRQNLGER
LGALATQLPQGVQVPVMSPLTSSTSVVLDIGLTSDKRSLMELRTLSDWTLKPALLAVPGV
AKVAVFGGDTKEYQVQIHPEQLLKYNLAVDDVLTAARRATGVRGAGFIDTSNQRIVLQSA
GQALTVQEIAGTIVRHQAGGNVTLGDVAQVVVAPEPPIGASSIMGHPAVQLVISEQYGAN
TLEVTQSVEKALASMKPGLTAQGITLHADLFRPANFITTATGNIKSSLMIGGVLVVIVLM
LFLYNLRTAAISLVAIPLSLLAAVTVLEYFGFSLNTMTLGGLAIAIGLLVDDAVIVVENI
YRRLRENRHAEVPRAVFTVLLDASLEVRSAVVYATLAIALVFIPVLTMSGIAGRLFAPLG
IAYVLATLASLLVAMTVTPALCYLLLANRPLPESEAPLVRWTKDRYRGMLLRVETSYRVV
MTVVVVVTLMAVAALPFFGGSFLPELREGHFIVHMSAVPGTSLQESIRIGNHVTAALLKL
PFVRSVSQNAGRAEKADDTWGTQYSEFNVDLKPLSGDAAEAAVSDIRKALAPFPGVNFAV
KTFLTERVEETLSGFTAAVAVNIYGNDLDTLDAKAADVAKILAQLPGAADVQVQSPPGTP
QLVVRLRKQALAHWGFDAVTVLDAIRTAYQGDQVGQVYDGNRVFNVSVILAPQQRGKVAE
VGALPIRNAAGTYVPLKELADVYEDAGRYVVLHDGARRVQTVTANVSGGNVSAFVAAAQQ
QIAAKVALPPGSYVEFGGAAAAQSQSTHDLLINSLIAGVAIILLLFMVLGSTRSLLLVLV
NLPFALVGGVLAVFATGGGLSIGSMVGFVTLFGITLRNSIMLLSHYDHLVNVEGMTWGPE
AALRGAQERLSPILMTALVTALGLLPLAIGSGAPGREIEGPMALVILGGLVTSTALNLLV
LPTLALRYGRFQRDTPGDTHPAEA