Protein Info for LRK53_RS17385 in Rhodanobacter sp000427505 FW510-R12

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 473 transmembrane" amino acids 22 to 45 (24 residues), see Phobius details amino acids 185 to 207 (23 residues), see Phobius details PF26769: HAMP_PhoQ" amino acids 208 to 253 (46 residues), 48.3 bits, see alignment 7.9e-17 PF02518: HATPase_c" amino acids 363 to 470 (108 residues), 57.5 bits, see alignment E=1.7e-19

Best Hits

Predicted SEED Role

"Sensor protein PhoQ (EC 2.7.13.3)" in subsystem Lipid A modifications (EC 2.7.13.3)

Isozymes

Compare fitness of predicted isozymes for: 2.7.13.3

Use Curated BLAST to search for 2.7.13.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (473 amino acids)

>LRK53_RS17385 ATP-binding protein (Rhodanobacter sp000427505 FW510-R12)
MPSRAPTATTNERGSPRRPLSLAARAAIATTFVLAGFLGLVGLTLTQTNKARALRTLHDR
LENFAIAYITGTDVNRYGRLLPPETLPNPNFSRPGSGLYAVALGDHGFHWESSSAIGRDF
TFLKLLEPGQSQFVGPVETRMGRLYYYSYGVALDTVEKKSVRLTVMVAQTEDQLEGENAV
FRHTLVIWLSILGVMLIALQLLLLRWSLTPLRKVASDMSRVERGDSEQLDSQYPLELTGL
TERINAFITNEREQRTRYRHTLADLAHSLKTPLAVIRSQLESPTAGDEAARRASVLDQVR
RMNELVAYQLSRAATSGRQTFASAVPIAGHAEDLVQGLEKVYAAKNVLCEFDIEDGAVFY
GEQGDLLELMGNLLENAFKWAGHRVLLVVKMQPRPGRQRPGLWLGVEDDGPGIAEDQIEK
VLQRGVRGDERVQGHGIGLSIVQDIVHAYQGELVVDRSPELGGARFSVKLAAS