Protein Info for LRK53_RS17315 in Rhodanobacter sp000427505 FW510-R12

Annotation: MgtC/SapB family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 36 to 75 (40 residues), see Phobius details amino acids 88 to 120 (33 residues), see Phobius details amino acids 137 to 154 (18 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 197 to 218 (22 residues), see Phobius details amino acids 230 to 251 (22 residues), see Phobius details amino acids 259 to 279 (21 residues), see Phobius details amino acids 297 to 319 (23 residues), see Phobius details amino acids 328 to 352 (25 residues), see Phobius details amino acids 359 to 379 (21 residues), see Phobius details amino acids 391 to 409 (19 residues), see Phobius details PF02308: MgtC" amino acids 11 to 126 (116 residues), 56.6 bits, see alignment E=3.3e-19 PF13194: DUF4010" amino acids 175 to 382 (208 residues), 151.3 bits, see alignment E=3.1e-48

Best Hits

KEGG orthology group: None (inferred from 50% identity to mmb:Mmol_0383)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>LRK53_RS17315 MgtC/SapB family protein (Rhodanobacter sp000427505 FW510-R12)
MGVDFSWTGFAVALGIGLLIGAERERRKGGDGDAVAGIRTFAVVALLGAVGASFGTATLL
LALAAVAGLLAIAYARDYGSDRGLTTEVSLLLCLLLGAMAIQQPPLAAALAVALTILLAA
REPMHHFVRGVLTAEELNNLLVLAAATLLVLPLLPDRPLGPFDAINPRALWLIVILIMSI
GAAAHALLRLVGSRVGLPLAGLLSGFVSSVATIGVMGVQARDQPARRRSAIAAAVLSTVA
TFVQMAAVLAATDLATLRVLAVPLACGGVTAALYGALWTWKGLRLSTPDPVQGSVVFSVR
ASLALGLMIAVVLLVSAAMRAWLGDRGLAIATAIAGFADTHAAAVSVAALAATGKIEPAA
TALPILIALSSNSLSKAVIARANGDRDFARPVLLGLALVLAATWLGWWLG