Protein Info for LRK53_RS16435 in Rhodanobacter sp000427505 FW510-R12

Annotation: aspartate/glutamate racemase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 PF01177: Asp_Glu_race" amino acids 26 to 216 (191 residues), 100 bits, see alignment E=8.6e-33

Best Hits

KEGG orthology group: K01797, [EC: 5.1.99.-] (inferred from 64% identity to dar:Daro_1336)

Predicted SEED Role

"Hydantoin racemase (EC 5.1.99.-)" in subsystem Hydantoin metabolism (EC 5.1.99.-)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 5.1.99.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (248 amino acids)

>LRK53_RS16435 aspartate/glutamate racemase family protein (Rhodanobacter sp000427505 FW510-R12)
MVQRIKIIVPIPMGAEGVAARASQLPPRLVLPGFEPEFVSVAKGAALGDSAYDSLLMDFS
VVEAGLRAQEEGYAAVCIDTVSDSGLDALRSRLDIPVIAPGAAAFHVACMLGKKFTVLTM
WDEWFALYEKTLTAYHLWPRVASLRSINTRPDLEELLAGKEEVVFQKLEDAARKAIKEDG
ADVIVLGSTTMHQSHTYLSERLPVPVINPGQVAWKLCEMFLTLGLRHSRKAYPAPQAPND
AVYHGFAN