Protein Info for LRK53_RS16175 in Rhodanobacter sp000427505 FW510-R12

Annotation: LPS assembly protein LptD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 790 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF19838: LptD_2" amino acids 219 to 370 (152 residues), 38.9 bits, see alignment E=4.6e-14 PF04453: LptD" amino acids 330 to 700 (371 residues), 276.4 bits, see alignment E=4.9e-86

Best Hits

Predicted SEED Role

"Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (790 amino acids)

>LRK53_RS16175 LPS assembly protein LptD (Rhodanobacter sp000427505 FW510-R12)
MTPKLPPRRLLAVAAALALFGGQADASTPPAPPAAPTNQACPLGSFHCAPRPLNYAMCRP
NALLEFYDPSLGKDASLRETSPTLVQAQHVDSSNQSVYHLSGEVKLQRADQQLQAERIDY
NDQNTDYDARGNVRYQEAGQLLAASSMRGNTEASRGTANDVRYQMLDARGNGTASQGQML
DAQHSRYSQATYSTCDVGHHLWEFRAKSITINKETGVGVARNATMRLGNVPFLYLPYFSF
PVDDRRKTGFLYPTVGHTSRSGYEISTPYYLNLAPNYDATLDPRYYSARGAMLAGEFRYL
TAGSRGQLNVEYVPDDRGGNDGLAVTKGDSRYLVNFSDSTQLWRGWQFVGSYNHASDSSY
LYDYGDALSHSAVYTLASNAAIMGGGKWWNASFGGTIYQNVNPFVTDYGLPYKQLPYAKF
SLDVPLSRWLEVGVDSSAVAFRKAGFVEGQREDIYPYLAADFGSSAWFVRPRLGYRYTAY
QLDSSYQNYGYGGQLGSGATSPFNQKSPSRSMPIVSLDSGLVFDRSTTLFGSSYTQTLEP
RLYYLYVPYRKQDNLPLFDTNVMSFDYWQLFSTNQFSGADRQMDANNLTAALTSRLLDDG
GVERVSASIGQIHYFSPQKVLGTDWVRSSYVAQLDVQLSERWRLGSSYQWSPNTRLTDLA
SVQLQRRIRTDGVLNFSYRYRRGLLEQYNASVVYPVSERWRLVGAWTYSVKDRESVDALA
GVEYDSCCVSLRLVGRSYVNQSYYGFGPAPTGGNINHRDNAVMFEVVFKGLGSTGSQIDP
LLRRDILGYQ