Protein Info for LRK53_RS15955 in Rhodanobacter sp000427505 FW510-R12

Annotation: PhzF family phenazine biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 182 to 201 (20 residues), see Phobius details TIGR00654: phenazine biosynthesis protein, PhzF family" amino acids 6 to 291 (286 residues), 213.2 bits, see alignment E=2.7e-67 PF02567: PhzC-PhzF" amino acids 10 to 288 (279 residues), 208.9 bits, see alignment E=1.1e-65 PF05544: Pro_racemase" amino acids 45 to 118 (74 residues), 32.6 bits, see alignment E=4.6e-12

Best Hits

KEGG orthology group: K06998, (no description) (inferred from 47% identity to bgd:bgla_1g30360)

Predicted SEED Role

"Phenazine biosynthesis protein PhzF like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>LRK53_RS15955 PhzF family phenazine biosynthesis protein (Rhodanobacter sp000427505 FW510-R12)
MPRNRRFIQLDVFSAKPLLGNPLAVVVDGAGLDDATMQAFARWTNLSETTFLLPPTSAAA
DYRVRIFTPHQELPFAGHPSVGSAYAAIESGLVSPHQRQLQQECAAGLLPVRVEGSGSGR
IIHVQAPPAGLQTVAAQQRARLGWAMHAELAESQLRLVDNGPRWFVCNLHEEAAVRQLQP
DLAAIGALCVAAGAVGVSVFGRQRSGEASMAVRAFCPADGTPEDPVTGSANAAIMAFLAE
VGDPAGYGLRYRASQGREVGRDGCVEVVRDATDGSISIGGACAVVIRGELQLD