Protein Info for LRK53_RS15690 in Rhodanobacter sp000427505 FW510-R12

Annotation: LPS export ABC transporter periplasmic protein LptC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 198 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details TIGR04409: LPS export ABC transporter periplasmic protein LptC" amino acids 17 to 193 (177 residues), 103.1 bits, see alignment E=6.2e-34 PF06835: LptC" amino acids 19 to 192 (174 residues), 86.2 bits, see alignment E=1.1e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (198 amino acids)

>LRK53_RS15690 LPS export ABC transporter periplasmic protein LptC (Rhodanobacter sp000427505 FW510-R12)
MKLRRWLRDRRLPAATLAIALAAGVVQLLLWWFGPAPRTSDFVGPPRSGYTLTDARMTEY
NAEGLPSFYLQSPHLERREGDDSLYLSSPTFQLPSNQAGVPDWLGQSLYGWVNKDGTQLK
LQGPVEMNRTAFGDTPATHLQTADVTAWPKQNRLETAAPAQMVQGGTRISGVGMRADLND
KHLELLDDVHATFPPRQR