Protein Info for LRK53_RS15525 in Rhodanobacter sp000427505 FW510-R12

Annotation: alpha-amylase family glycosyl hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00128: Alpha-amylase" amino acids 41 to 414 (374 residues), 112.1 bits, see alignment E=2.1e-36

Best Hits

KEGG orthology group: None (inferred from 60% identity to xca:xccb100_1702)

Predicted SEED Role

"Cyclomaltodextrin glucanotransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>LRK53_RS15525 alpha-amylase family glycosyl hydrolase (Rhodanobacter sp000427505 FW510-R12)
MMAKNLITGLALAMVAGLAQAATPAEFVGTDAPFASNAIYFVMTDRFVNGDPSNDHRDQG
GAHRTFDVPVAGAPKGESANIGYLGGDFKGVLDNAGYIRGMGFGAVWITPIVDNPDEAFT
GGDPVSWGSKFTDRGKTGFHGYWGVNFYKLDEHLPSKGLDFRQFTAKMHSAGLKVVQDIV
VNHGSPAFSMPVRQPQYGQIFDKNGKLVADQQNLPPYQLDPVRNPLHRFYHAYDDLVQLS
NNDDQSPAVLDYFVGAYEQWIGEGADAFRIDTISHMSTAFWKQFSARIRAKHPGFFMFGE
AFDYSPDNIGQYTWPSSGAISVLDFPLRGRIAEVFERPGSDYAHLLDRLYLTNGPYQNPY
ELVTFYDNHDMARLKTDDAGFIDANNWLFTARGIPAIYYGSETGFERGKAEHEGNRNYYG
QQRIDNAAKSPVYRQLKRIALLRESTPAMQRGLMLPLRFAGNQAAFYRVYQKGDTHQIAL
VLLNKGDAVASFDISDYLQPGRWQPALGGSAIDVAEHGRLRARVPAHDVQVYLLDAAATH
PELVAELTRLMEERGHPVH