Protein Info for LRK53_RS15515 in Rhodanobacter sp000427505 FW510-R12

Annotation: Six-hairpin glycosidase-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 736 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF17389: Bac_rhamnosid6H" amino acids 181 to 296 (116 residues), 28.1 bits, see alignment E=1.3e-10

Best Hits

KEGG orthology group: None (inferred from 54% identity to xcc:XCC2467)

Predicted SEED Role

"Six-hairpin glycosidase-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (736 amino acids)

>LRK53_RS15515 Six-hairpin glycosidase-like protein (Rhodanobacter sp000427505 FW510-R12)
MLSILAAAMLAASASATAPAWHDGLDWHGVHVAISRDAQQNYTLAWPYGQRVIAAQPLRT
ETASLLFDGLFAMAQDDLKQDSVSAIRDGAFDHGQPIPCQCFETGLKWPYVWTRDLSYAI
DLGLWRFDPTRSRNGLKFKLSDVRVPSAPQGLYAMQDTGSGGSWPISTDRVVWFFGARHL
LDDQAFASDVYKALGDTLAQDRQYAFDAAFGLYRGETSFLDWREQTYPAWTADEVTFIAQ
SYALSTNVLHYQALQLAASLADTHHDAKAAAGYRTRAAALKAAINAHFWRADRGMYMSYI
GGDGTPYDSYDLLGIALAVDSGVADGERARQTLANYPAWPAGSPVIWPERSDQPVYHNRA
IWPFVSAYALRAARKTEQPARIAHEIESVLRGAALYGSNMENYELLTQGQHVDEGKLSGP
VVNSPRQLWSVAAALAVVTEGVFGLNEDGSVEPKLPTALVPMLFGQRRTITLDLRNRQIT
LQLPGKVTGNLLVADRTRTQGTATTVTLKAVQVPDAPLRTDAPLYAPITPAAPRVHADGG
GWQVSTDGKMRLYLNGRVHGDIDSSTRLAPQPDLACLSTTRVDVYGLESLHSPDTCVGET
AKVNGSWPRTWTAPASGRYRVALDYANDHGPINTGVTAAVKMLDVRCDGSDPQRLPIVMP
HSVRAQQSTWASFTAKAGSTCRFALDDGFNMSYLAHFAHYTADNGSGGNGGSSGPLNQAE
VHDLLIAPLAAGRGAP