Protein Info for LRK53_RS15500 in Rhodanobacter sp000427505 FW510-R12

Annotation: DUF5110 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 795 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF01055: Glyco_hydro_31_2nd" amino acids 253 to 555 (303 residues), 214.5 bits, see alignment E=3.9e-67 PF21365: Glyco_hydro_31_3rd" amino acids 566 to 653 (88 residues), 81 bits, see alignment E=1.1e-26 PF17137: DUF5110" amino acids 670 to 739 (70 residues), 48.8 bits, see alignment E=9e-17

Best Hits

Predicted SEED Role

"Alpha-glucosidase (EC 3.2.1.20)" in subsystem D-Galacturonate and D-Glucuronate Utilization or Maltose and Maltodextrin Utilization (EC 3.2.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.20

Use Curated BLAST to search for 3.2.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (795 amino acids)

>LRK53_RS15500 DUF5110 domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MSKPVSPRRHRLAWLCLGLALAPLGAGIAQALPSPATTSPAPLMDTIVKHGISIDTRGGQ
LVVRFVAPGIVHVQRPHAAATPALVLDPAASLPAFHARRSDDDDANGPMLASERGSVRWD
RQHHQLRISDAQQQPLLQIELDPAPPSTLSLRHDPRDALYGIGGYNATEDASAGMLRSGT
QVAMSGEQGHAGAPFVWSSAGYGVLLDSDGATFTLAPGAISAVDAARRQADYYILLGTPA
QIFAELAQLSGRTPLFPKWAMGFTNSQWDIDQQELLQIVDTYRAKHIPIDNITLDFDWKA
WGEDDYGEFRWNPIKFPDGPNGELKKQMDARGIRLTGIMKPRIHLDTVEGRYASAHGFWV
PDEKVSDDYFSHKPVKDINFDLAAARRWFGELAIKYGYDHGIVGWWNDEADTVGSDTEFL
NMQRALYDSQRAVSNQRVWSINRNFWLGSQRYAYGLWSGDIDTGFASMAAQRARMLSAIN
VGAMQWGMDGGGFRNGTPTPENYARWVQFGAFTPIFRVHGELGQKRQPWVYGPVAEQAAT
AAIRLRYALIPYIYSYEHARRADGVGLVRPLLFDWPNDPNLRNDVDSWLFGDWLLASPVV
KQGQRAKDIYLPTGRWIDWFSGKRYDGGRRIRLAIDSEHWSDIPLFVREGAIIPTRADPV
DYVGERPLTQLDVDVFPAAQHSTFDYYDDDGVSYDYGHDAYFLQPLSVQRRGDTVQLELG
AASGSFKPALRFYLLKVHGGAATGVSGKLKAFASLDALQQADGEGWASGHDRYGEVTWVR
VAAARATALTLDLKP