Protein Info for LRK53_RS15480 in Rhodanobacter sp000427505 FW510-R12

Annotation: alpha-glucosidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 PF00128: Alpha-amylase" amino acids 14 to 464 (451 residues), 412.3 bits, see alignment E=3.6e-127 PF16657: Malt_amylase_C" amino acids 464 to 533 (70 residues), 31.3 bits, see alignment E=1.7e-11

Best Hits

KEGG orthology group: K01187, alpha-glucosidase [EC: 3.2.1.20] (inferred from 73% identity to psu:Psesu_1109)

Predicted SEED Role

"Maltodextrin glucosidase (EC 3.2.1.20)" in subsystem Maltose and Maltodextrin Utilization (EC 3.2.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.20

Use Curated BLAST to search for 3.2.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (540 amino acids)

>LRK53_RS15480 alpha-glucosidase family protein (Rhodanobacter sp000427505 FW510-R12)
MSDAPWWRGAVIYQIYPRSFLDTDGDGVGDLPGIIERLDYVAGLGVDAIWIAPFFRSPMA
DFGYDIADYRDVDPLFGTLADFDALLAKAHALGLKVMIDQVLSHTSVEHAWFRESRQSRD
NAKADWYVWADAREDGGPPNNWLSLFGGSAWQWEPRRGQYYLHNFLTSQPDLNFYHPDVR
AAILDSVRFWLDKGVDGFRLDAINFCFHDALLRDNPPKPKDKRVGRGFSPDNPYAFQYHY
YNNTRPENLAFLGELRALMDRYPGAATLGEISSEDSLATMAEYTRPGRLHMGYSFELLTD
DFSAAYIRSTVQALEAQMTDGWPCWAISNHDVERVLTRWGGGQPSRQLANLLTAMLCSLR
GSVCVYQGEELGLTEAELPYEALQDPYGIAFWPQFKGRDGCRTPMPWSDADAQAGFSGGM
PWLPVPAEHHALAVSRQQADPHSVLNGFRRFVHWRQSQPALRWGDIAFIDTAEPVLAFTR
RLHGQTVLVAFNLADADVAIDLPAELGEPQPLDGHGLVAGRLDGRRLQLPGYGAWFARMA