Protein Info for LRK53_RS15345 in Rhodanobacter sp000427505 FW510-R12

Annotation: lipopolysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 493 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 46 to 65 (20 residues), see Phobius details amino acids 86 to 111 (26 residues), see Phobius details amino acids 122 to 140 (19 residues), see Phobius details amino acids 152 to 172 (21 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 292 to 319 (28 residues), see Phobius details amino acids 332 to 353 (22 residues), see Phobius details amino acids 373 to 400 (28 residues), see Phobius details amino acids 418 to 440 (23 residues), see Phobius details amino acids 446 to 469 (24 residues), see Phobius details PF01943: Polysacc_synt" amino acids 18 to 277 (260 residues), 101.7 bits, see alignment E=4.9e-33 PF13440: Polysacc_synt_3" amino acids 36 to 328 (293 residues), 205.9 bits, see alignment E=8.6e-65

Best Hits

KEGG orthology group: None (inferred from 33% identity to nhl:Nhal_2193)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (493 amino acids)

>LRK53_RS15345 lipopolysaccharide biosynthesis protein (Rhodanobacter sp000427505 FW510-R12)
MPDNEQKQRTSVRQALSLSFVQRLVGLVFSFGSVVIISRLLTPAEVGVFSVAAGVVALIN
MLRDFGVSEFVVQEPVLDEALVRTVFTINLMIAWVLGGIIIAASGVIGAFYGDPGVTRVL
KVLGFVFFLLPFGTTAMALLNRELEYGKLAKIRISESIIRSCTAVALAYAGFTYMSIAWA
SVAGISALIVGCTLWGWQYRVKGLSFVHWKRVLHFGSNRTISDVASQLGEQSASLVIGKM
SGMTDVGLFSRGYGVVNMYRTNVLGAIGAVAFPAFAREHREHATAPELFLRALVYTTGIS
WPFFACGVILAYPIINILFGDQWDAAVPLMRWLCLAAFIGTLMFQCNLFLVALGRVRAVT
RVEVQYQTARIGITVGAAFYGVTAVAAAQVLVYIIATVLYYRKMRNYDALAVRKCARALV
PSAVVTLGACAVPAALVLWPELMARHMLLAFALALVGGGAGWLLGLAVARHPLLDELKRV
VSRVYSRYHLVRG