Protein Info for LRK53_RS15310 in Rhodanobacter sp000427505 FW510-R12

Annotation: PEP-CTERM system TPR-repeat protein PrsT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 919 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR02917: putative PEP-CTERM system TPR-repeat lipoprotein" amino acids 1 to 893 (893 residues), 585.3 bits, see alignment E=1e-179 PF13181: TPR_8" amino acids 120 to 152 (33 residues), 19.4 bits, see alignment (E = 9.8e-07) amino acids 264 to 294 (31 residues), 17.2 bits, see alignment (E = 5.1e-06) PF13432: TPR_16" amino acids 125 to 187 (63 residues), 33.1 bits, see alignment 7e-11 amino acids 166 to 212 (47 residues), 19.8 bits, see alignment 9.9e-07 amino acids 192 to 261 (70 residues), 16.6 bits, see alignment 9.7e-06 amino acids 265 to 315 (51 residues), 35.7 bits, see alignment 1.1e-11 amino acids 435 to 493 (59 residues), 21.2 bits, see alignment 3.5e-07 amino acids 469 to 504 (36 residues), 21.9 bits, see alignment (E = 2.1e-07) amino acids 510 to 563 (54 residues), 31.4 bits, see alignment 2.2e-10 amino acids 576 to 632 (57 residues), 25.4 bits, see alignment 1.8e-08 amino acids 770 to 833 (64 residues), 26.8 bits, see alignment 6.2e-09 amino acids 840 to 890 (51 residues), 24.5 bits, see alignment 3.3e-08 PF14559: TPR_19" amino acids 131 to 190 (60 residues), 28 bits, see alignment 2.5e-09 amino acids 271 to 315 (45 residues), 30.2 bits, see alignment 4.9e-10 amino acids 307 to 368 (62 residues), 28.7 bits, see alignment 1.5e-09 amino acids 439 to 499 (61 residues), 25.8 bits, see alignment 1.2e-08 amino acids 509 to 572 (64 residues), 27.2 bits, see alignment 4.3e-09 amino acids 542 to 604 (63 residues), 30.1 bits, see alignment 5.5e-10 amino acids 843 to 909 (67 residues), 25.2 bits, see alignment 1.8e-08 PF13371: TPR_9" amino acids 238 to 301 (64 residues), 35.2 bits, see alignment 1.1e-11 PF12895: ANAPC3" amino acids 240 to 320 (81 residues), 29.7 bits, see alignment E=7.1e-10 PF13174: TPR_6" amino acids 265 to 293 (29 residues), 14.5 bits, see alignment (E = 5.1e-05) amino acids 532 to 563 (32 residues), 13.4 bits, see alignment (E = 0.00012) PF13414: TPR_11" amino acids 270 to 309 (40 residues), 34.8 bits, see alignment (E = 1.2e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (919 amino acids)

>LRK53_RS15310 PEP-CTERM system TPR-repeat protein PrsT (Rhodanobacter sp000427505 FW510-R12)
MLCAALSLSGCGLASRQGSVDAGTRYQAKGEYRAAYIEAKKVLQRDNKNGEAWLLLGQAS
LMLGNPADTLSELQNAKANKVPAERWAVPMGRALLVTQQYDKLLATLPSDQPYQSKIKAR
VAALRGDAYRALRQFDQARQTYLAALSADPENLGALVGLAQLAATANDPASAGKYLQQAL
AAAPENPQAWVAKGDLAFGSADFAGAEADYQKVMGLKNPDWLPQERFYALTRLASAQAQQ
KQFDKALASIQTLEKMSPQQPYPHYLHAMVLYRQGDLDAAIAELQQVLKMSPDNVQAQLL
MGAVNYAQGNYGQAEMYLSNAMGMDQKNVDVRKLLALTLYREGRSRQALDTLRPVAPGAL
SDTELLAMLERAATTGAGSPGAAAAASSASNPPDTRLASAGNALASGNEAEAIRLLQEIP
AGNASTEARRNSLLVMTYLREQRPAEAVKVAAAYASGNPRNSAAHLMYGTALVAAGQRPE
ARAQYSEALKLDPENLAALLSLGSLDSIEGHHEAAAGRYATVLKKDPHNAAAMTALGQLA
ALQGDKAEAARRFKQAIDEAPKSINAYIALVALDSESGKFDEALGTATQLAAANPDNPVA
LNALGAAELNAGHHGEALKPLQQAVNLAPQMPLYRTNLARAQILGKDTKAAEGNLEAVIK
ADPGQATAVALRAFLKLQDHNLPGAIALAQTLQKQAPTRATGFSLEGDLYMANKSYREAA
QAYQQGLKLRYDRPLVFKSFQALSESGANAPEGVLRDWLAKHPDDAATRLLLASYYLNRT
QNALAAGQYEQVLKTYPSNVSALNNLAWIYTEQNNPKALALAERAYQLASGSPDIADTYA
WALIAHNQPKRALPILLQAAKATPKTPAIQYHLAVAQARTGDPAGALGTLTTLQKSGADF
QDKPAAEKLYRELTGLAAK