Protein Info for LRK53_RS15210 in Rhodanobacter sp000427505 FW510-R12

Annotation: TMEM43 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 269 to 288 (20 residues), see Phobius details amino acids 296 to 316 (21 residues), see Phobius details amino acids 322 to 340 (19 residues), see Phobius details PF07787: TMEM43" amino acids 112 to 291 (180 residues), 82.3 bits, see alignment E=1.9e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (344 amino acids)

>LRK53_RS15210 TMEM43 family protein (Rhodanobacter sp000427505 FW510-R12)
MKGRRTGSLQGLAWNVIGALLLLAGIGLAATTERSLLNYRVVAGLHGGAVIDLGTNSPPA
GGEHGAMARVTGTPTVVEAPRDPDFNLRANTPVLVRHVEMFQWREVRVGSGVHYELDWVD
HLLDADRFEEPQGHANPVGFPLSGKQFDAGLVRLGGFGLGPVLLHAIPGTQQVTPDPGAL
PANLAVSFSRYQDYLVTSARPGDPRLGDVRVSWSEVPLQELTVVARVDGDRLVAATEAAD
GKGYVVQVGDVPVLDIFPDLPVPPEFVTGWRILAVLLASLGAFVLLAVQRNRCEPLLALG
LAALAVGIVAGVLWLGNDTRNMLGWLALALCGLLLTGWRLRRVR