Protein Info for LRK53_RS15055 in Rhodanobacter sp000427505 FW510-R12

Annotation: flagellar hook-length control protein FliK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF02120: Flg_hook" amino acids 250 to 330 (81 residues), 70.7 bits, see alignment E=3.6e-24

Best Hits

Predicted SEED Role

"Flagellar hook-length control protein FliK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (366 amino acids)

>LRK53_RS15055 flagellar hook-length control protein FliK (Rhodanobacter sp000427505 FW510-R12)
MTVSAPAAPSAASAAASRAAVEPRDGNATPTGFDSQLHAARQRQEPDSANEASGGQQDER
QPTSAARSPRDPSAAAVPAAKPDVAAAVPVPVPVQAELADVTAADGSAPRREPGDEPAPA
VADAMLALLGSSLAGVWPPVAGGARAVAGAPPSGGKGATGDAQAAAMLQLAVAASPAAAP
VNIVPLAASMLAPAQAVPSAADALNKQAAQAHAAAAVLPAPPAAAAPPAVHQLQLPTSPT
SPSFAQDLGQQLVWLSGQNVKQARIRLHPEELGSLDVSVSVSHGRVDVVFSAQHAAAVPA
VQQSLPLLDQMLARHGLSLGHAEVGQHDRGDRRGHAGGGGALEEIADIHGAAPMTVARIG
LLDAFA