Protein Info for LRK53_RS13970 in Rhodanobacter sp000427505 FW510-R12

Annotation: peptidase S10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 501 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00450: Peptidase_S10" amino acids 94 to 461 (368 residues), 70.6 bits, see alignment E=9e-24

Best Hits

KEGG orthology group: None (inferred from 67% identity to xom:XOO_2822)

Predicted SEED Role

"Carboxypeptidase C (cathepsin A)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (501 amino acids)

>LRK53_RS13970 peptidase S10 (Rhodanobacter sp000427505 FW510-R12)
MRQSLPSVLLAAFVLAGSSVAPAFAADSHKPAAAEASSSDGFQLPPLPADAHVTQSATVD
GKTLKYTVTVGSLPVRDEKGKTTGEVVFTAYTMTGKDRPVTFALNGGPGAASVYLNLGAI
GPKKVNFGVEGDSPSDPATLHDNPGTWLGFTDLVFIDPVGTGYSRALIDDKEAAKQFYST
DNDIKYLSRIVYDWLVKNGRMGSRKYLVGESYGGFRGPRITEYLQTRLGVAMKGVVLLSP
YLDPAAYHDENVSPLPWMLTLPSIAAAHLEREHKLSAEAMAPIVEYTRGEYASDLMRGRS
DPQATERVVKKVTELTGLDPLFVKRSGGRIETQAYLREVYRAEGKLGSRYDSNVTAWDPF
PYAPHQQTGDPILNGIIAPTTSAMVDFVTRVVGWKYDGRYNALSYEVNKLWHEDEDADKG
SVSQLREAVANDPGLRVLITHGWDDLSCPFMASVLIVDQMPAMGDPIRVQVKNYPGGHMF
YARADSQAALTADVRALYGIH