Protein Info for LRK53_RS12915 in Rhodanobacter sp000427505 FW510-R12

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 915 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00246: Peptidase_M14" amino acids 95 to 224 (130 residues), 47.2 bits, see alignment E=1.2e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (915 amino acids)

>LRK53_RS12915 hypothetical protein (Rhodanobacter sp000427505 FW510-R12)
MHAPVRLLLAVLLASGTFGAFAATGSDSSTPYARDPTQPVDQAYTDQILKFTTAPSFNSP
LTDYLPASTSVPTPDKVLGRIAGAPDYLPHVADVHRYFRELAAASPRVKVFSIGKSEEGR
EMIAVAIADENLLADLDANKARLAKLADPRRIGMDDAVADQLVAQSTPVYYITGAIHSTE
TGSPTALMELAYRLAVDEAPYIQRIRSHVITLITPVVEVDGRDRMVDLYNWHLAHPGQNY
PRLLYWGHYVAHDNNRDAMGMSLNLTRNVADTFVGWHAQVLHDLHESVPFLYDNTVGDGP
YNAWIDPILAGEWQQLGWDNVQQMTRLGMPGVFAHGGFDTWSPGYLMFIAAMHNGISRLY
ETYGNAGADTVQRILEPEEYQRTWYRPNPPLPTVLWSQRNNNNYQQTGLLTALNYFAGNG
QQFLKNFYLKAKRSIEKPQQAGPAAYVFPAGDKRSGSRAQLLRILQLQHAEISRTSAPVT
VTLPKQDDDRKKAKTRTFPAGSYVVRMDQPYSRIADTLLDRQYWSPKDPQQHPYDDTGWS
MGDLFDVQVVRVTDTAILKAPMRLLDVPVTVPQGLAALDMPSAKLPRIALMHTWLSTQTE
GWWRMALDKLGVPYDYISTQDVAKAGDLRAKYDVILFAPVGDTSTQRIVDGLPMWGEPLP
WKTTALTPNLGHIDATDDIRPGLGESGIAHLKRFVQAGGLLVTAEDTAKFAIDEGLAPGV
FVTKTEKLKVVGSVLQAKFVDRGSPIAAGYDSDELALYSAAGQSFKVSNLVTGDHGLPTA
KEFQRPTGRGGPHDTDTPEGRTSTAPAALPDVKPWQPLPLNAEQMRNNPWVIPAEQRPRV
ILRYAEAKNLLISGLLDGGDEMAERAAVVDARYGKGHVLLFAGNPIWRGETIGSYPLVLN
AIVNFNRLDTPPAKP