Protein Info for LRK53_RS12635 in Rhodanobacter sp000427505 FW510-R12

Annotation: folate-binding protein YgfZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 TIGR03317: folate-binding protein YgfZ" amino acids 136 to 200 (65 residues), 67.1 bits, see alignment E=5.1e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (267 amino acids)

>LRK53_RS12635 folate-binding protein YgfZ (Rhodanobacter sp000427505 FW510-R12)
MPTHLPAETLLLEGHDAPAFAQAQFSSAINSLATGHWQFSAWLDPQGRVRALFHLARLAD
QRYLLLLRGGDAAAMADALRRFVFRAKLTVTALPPRALATGPALPLHAVIDGGESVSLGG
DTYSLRISAVGAGDDAWRLPQLHAGWPWLPTPLLGELLPPALSLHRLQAVAIDKGCYPGQ
EIVARLHFRGGHKRHLHRVTLSQATTAGNALHRDGRVVGCVLDVVATNDGNEALVVLADD
IAAQLSCAHPQPFDDDLALGIITSWPA