Protein Info for LRK53_RS12165 in Rhodanobacter sp000427505 FW510-R12

Annotation: sulfate ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 TIGR00968: sulfate ABC transporter, ATP-binding protein" amino acids 4 to 242 (239 residues), 365.4 bits, see alignment E=6.2e-114 PF00005: ABC_tran" amino acids 18 to 164 (147 residues), 129.9 bits, see alignment E=1e-41

Best Hits

KEGG orthology group: K02045, sulfate transport system ATP-binding protein [EC: 3.6.3.25] (inferred from 57% identity to cja:CJA_2240)

Predicted SEED Role

"Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25)" in subsystem Cysteine Biosynthesis (EC 3.6.3.25)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.25

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (371 amino acids)

>LRK53_RS12165 sulfate ABC transporter ATP-binding protein (Rhodanobacter sp000427505 FW510-R12)
MSLVIDNLSRRFADFAALDDVSLHLAPGEFLALLGPSGSGKTTLLRILAGLDYPDEGNVR
QGNRDFLAAGARDRNVGLVFQHYALFRHLTVRENVAFGLRVRPRRTRPSKAQIRERVERL
LKRVQLEDFGDRYPTQLSGGQRQRVALARALAVEPELLLLDEPFGALDAQVRVALRRWLR
ELHEELGLTTVFVTHDQEEALELADRIAVMNRGRIEQVGTPQAIYQDPATPFVCEFIGRT
NRIPLNRVREGWAAGDWPLAMDPWGGRYQHAVAYVRPEHLVLVVPEGQPSWSARLRHVYP
AGSVTHLDLQVAEIDLGLEVDVASEDIARWGWQSGAILRVAPQQLVAFSIESDAGTTVVR
DRWTWRPPDLC