Protein Info for LRK53_RS11570 in Rhodanobacter sp000427505 FW510-R12

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 498 transmembrane" amino acids 40 to 63 (24 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 107 to 126 (20 residues), see Phobius details amino acids 132 to 153 (22 residues), see Phobius details amino acids 165 to 187 (23 residues), see Phobius details amino acids 193 to 210 (18 residues), see Phobius details amino acids 230 to 249 (20 residues), see Phobius details amino acids 255 to 274 (20 residues), see Phobius details amino acids 295 to 319 (25 residues), see Phobius details amino acids 326 to 348 (23 residues), see Phobius details amino acids 360 to 378 (19 residues), see Phobius details amino acids 384 to 405 (22 residues), see Phobius details amino acids 426 to 447 (22 residues), see Phobius details amino acids 459 to 478 (20 residues), see Phobius details PF07690: MFS_1" amino acids 46 to 436 (391 residues), 155.8 bits, see alignment E=7.2e-50

Best Hits

Swiss-Prot: 41% identical to MDTD_KLEP7: Putative multidrug resistance protein MdtD (mdtD) from Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)

KEGG orthology group: None (inferred from 43% identity to sec:SC3800)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (498 amino acids)

>LRK53_RS11570 MFS transporter (Rhodanobacter sp000427505 FW510-R12)
MPEMAPHTAADPHAVASGAPVPTTEAAGLREISTRERFRGLLWLVAAAFFMQALDSTVVN
TAVPAMAEALGVTPLGMRTALTSYVLTLAILIPASPWLCDRFGTRRVFGAAIMVFGLGSL
LCGIAQTLPQLVAARVVQGVGGAALMPVGRYVLVRSIDKREFVRAMSTVATFGLLGSVLG
PLLGGVIVEFTSWRLIFLINVPVALAGVWMNQRDMPDYRLDRANRFDLPGFLLFGAASAL
LLTASELAGSTPAPWLWMGLCALLAVLLGAVYVWHSRHTEHPVADLTLLKVRSVWVSLAG
GLFTRLGISGMFLLLVLFLQVGCGWSPLMAGLMMVPQALGSIIAKWAVNRALVHYGYRRL
LLGNTLIVAALLAAFALLGPSSPVWVIALLTFAYGGFAGLQYTTMNTLIYTDLDIRHASM
ASSMASTVQYLAMSFGIALSTLLMEAMLQGHAHEDYVVAFRWTMVLLAAITAAASSVFSR
LRHDRPLPDATARTSGAA