Protein Info for LRK53_RS11035 in Rhodanobacter sp000427505 FW510-R12

Annotation: major capsid protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 70 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 38 to 59 (22 residues), see Phobius details PF05356: Phage_Coat_B" amino acids 15 to 69 (55 residues), 53.1 bits, see alignment E=1.3e-18

Best Hits

KEGG orthology group: None (inferred from 39% identity to xcv:XCV2456)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (70 amino acids)

>LRK53_RS11035 major capsid protein (Rhodanobacter sp000427505 FW510-R12)
MNKFFKGKRAQLTTAGLLGLAAVTSASAAVDTTAIVAVITDAATAAAAIGVAVLSMHYGI
KLYKWIKGAG