Protein Info for LRK53_RS11010 in Rhodanobacter sp000427505 FW510-R12

Annotation: Tn3 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1033 PF13700: DUF4158" amino acids 12 to 175 (164 residues), 108 bits, see alignment E=4.8e-35 PF01526: DDE_Tnp_Tn3" amino acids 606 to 996 (391 residues), 452.1 bits, see alignment E=1.5e-139

Best Hits

KEGG orthology group: None (inferred from 70% identity to shw:Sputw3181_0442)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1033 amino acids)

>LRK53_RS11010 Tn3 family transposase (Rhodanobacter sp000427505 FW510-R12)
MSSAPSSHRLNILTPEEVEDLYGLPQFSDDDRNLYFDLSPLERASIDARTPAVGVYLALE
LGYFKAKRQFFTFEQNAVVDDLRYLLEQYFPGHTIESIKAPSRPTRGAIQQAVLDLFGYR
VCDNAAKAELEQKARRIATLSTQPLYILRESLQYLNNERIVALQYTTMQDMVGRVVTHER
SRVTRLLEQAMPPGIEQALDDLLRADEQMYRISALKREPKDFSYKELKREVERRKFFLPL
HEFAQSFLVAAGLSNESGKYYASLVKFYTVYKLQRMPKGTTRLYLLCFAFHRFRQINDNL
IEAFIHLVHQYENQSKRAAEAAMQQALVDASEHLQAAGEVLRLFIDKSIAIDSPFATVQK
KAFKLLKPERFAAVADYLRNVAFDKAAFQWAHYTKLSHRFKRNLRHLFCEMDFAGRVEDA
PLLDAVTFLQELLRAGKSPRQTQPALFPTAMIPKGLQRHLFAKTDGVDDTKEEDKRLEVD
RYEFLVYRLLRNALEAGDLFVKGSNEFRRFEDDLISDTRWEQRETVLQEIGAPLLLAPIE
DTLSTFREALEDRFAQVNQRITDSANKHIKLTGRAEKRRWKLIYPTAEEPVSGSFYSQLP
GTGIADLLRFVAGATGFLGAFTHVLDRYVKHAPDAREILACVVALGTNMGLWKMAEVSGL
SFSSLQGTARNYLRLETLRAANDAITNAIATLPAFHLYDIRDEMHSSSDGQRIETQIDTI
NARYSPKYFGLQKGVSAYTLVANHVPINARIIGTHEHESHYVFDLLYNNTSDIKPERHST
DTHGTNQVNFWILRTFGYGFAPRYRDLHKKMQTLVAFENPSHYADMLIKPARKVYDELIV
KEWPNIQRIMASLAQKDVTQATIVRKLSSYARQNQTKKALWELDNICRTLYILDFIDDVD
LRQSVQKALNRGEAYHRFRKAVAYVNGGKFRVHTEAEQQIWNECSRLIANAIIFYNTALL
SKVYAQKVAAGDHEAIAFLRGISPVAWQHINLFGTFEFDETTDKVDIDALAARFADPDYW
SKALREMQELPLG