Protein Info for LRK53_RS10975 in Rhodanobacter sp000427505 FW510-R12

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 129 to 153 (25 residues), see Phobius details amino acids 159 to 181 (23 residues), see Phobius details amino acids 193 to 210 (18 residues), see Phobius details amino acids 222 to 241 (20 residues), see Phobius details PF16955: OFeT_1" amino acids 119 to 212 (94 residues), 32.2 bits, see alignment E=4.5e-12

Best Hits

KEGG orthology group: None (inferred from 54% identity to msv:Mesil_3135)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (253 amino acids)

>LRK53_RS10975 hypothetical protein (Rhodanobacter sp000427505 FW510-R12)
MMLINWTHVGPTVVAAFLASLVEFVEALTVVLAVGVVRGWRGALMGSGAATLVLLAIIAI
LGPALTRIPLGVVQLAVGALLLLFGLRWLRKAILRAAGIIAMHDEAAIYTRQEETLRHMG
RRGGRWDKLAFATAFKITMLEGIEVVFIVIALGAGGIGLLLPASFGALAALVVVVALGIV
VHRPLSRIPENTLKFVVGVLLSAFGTFWVGEGLGLAWPGQDWSIFGLIVGYLVVATITVP
MCRTQPVATPSVP