Protein Info for LRK53_RS10355 in Rhodanobacter sp000427505 FW510-R12

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1035 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 335 to 353 (19 residues), see Phobius details amino acids 360 to 382 (23 residues), see Phobius details amino acids 388 to 411 (24 residues), see Phobius details amino acids 431 to 456 (26 residues), see Phobius details amino acids 463 to 487 (25 residues), see Phobius details amino acids 526 to 547 (22 residues), see Phobius details amino acids 858 to 879 (22 residues), see Phobius details amino acids 886 to 906 (21 residues), see Phobius details amino acids 911 to 933 (23 residues), see Phobius details amino acids 960 to 980 (21 residues), see Phobius details amino acids 990 to 1016 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 1016 (1011 residues), 991.7 bits, see alignment E=2e-302

Best Hits

Swiss-Prot: 48% identical to MDTB_SALTI: Multidrug resistance protein MdtB (mdtB) from Salmonella typhi

KEGG orthology group: None (inferred from 56% identity to rpx:Rpdx1_1891)

MetaCyc: 48% identical to multidrug efflux pump RND permease subunit MdtB (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-352; TRANS-RXN-353; TRANS-RXN-92

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1035 amino acids)

>LRK53_RS10355 efflux RND transporter permease subunit (Rhodanobacter sp000427505 FW510-R12)
MNLSAPFIARPVATTLLMAAIAVLGLIVFPRLPVAPLPAIDFPTIQVTATLPGASPATMA
ASVATPLERQLGQIAGVSEMTSFSAQGATSITVQFALNRNIDAAAQDVQAALTAASKSLP
TTMTTPPTWKKLDPADAPILILAATSSSLPLTTVDDEVDNLLARSISQVSGVAEVALGGE
QQPAIRVQLDPAKLAAMGLTLEQARAALVAASTDAAKGALDTPTTGYTIAANDQLTEAKK
FEHVVLAYRNGAPVQVADVGRAVRAAADRTAAAYYDNQPAILLTIYRQPGANVIDTVNRI
KARLPELTANLPAGVEVHTVLDRTTTIRASVRDVEFTLVLTVALVVLVVALFLRNLLATV
IPGITLIVVLLGTFAAMGWFGFSLDNLSLMALTIAVGFVVDDVIVVIENIYRHVEAGEPA
SAAALHGTREIGFTVLSMSLSLVFVLLPTAFMSGVIGRMFREFAFTVIAAVVVSALVALT
LAPMLCARWIHPAQRAPGLWSRRIEQGFERLTAGYRRSLDRVLAHAPWMLAGFLATMVLA
VALAWAIPKGFFPTQDTGLIGALADAAQSVSPARMQQLERRIDAVVATDPAVAGVASWTG
STGGNGFAQTQNTARYFIVLKPHSERKLAAPRVIERLNHALRDIGDAALHLHAVQDITVG
GRSSRGNYQFTLQDANLDELRHWSAKMLAAMHRLPEIEGVASDLQDAAPQLGIAIDRATA
AKLGVSIQSIDDTLDDAYGQRQISQYFTQVGTYPLILEATPQQLHRLGSLDDLYVKSTTN
STVPLSAVVRVDTEATGPLSIVHQGQFPAVNLSFNLRPGVSLGQAVAAIRQAAQAIGMPA
GVARKFTGNAGAFEQSLASLAWMFLLTVVAVYVVLGILYEDYIHPLTILSTLPSAGLGAL
VALDLAHMDLSVIGMIGVVLVTGIVKKNGIMLVDFAIAAERERGLAPREAIREACLLRFR
PILMTTMAALLAGVALAVGGGTGAELRRPLGVAIVGGLVFSQLLTLYSTPVVYLYLDRLR
AWLHGRRVASSENAA