Protein Info for LRK53_RS09495 in Rhodanobacter sp000427505 FW510-R12

Annotation: DUF748 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1221 signal peptide" amino acids 1 to 50 (50 residues), see Phobius details PF05359: DUF748" amino acids 21 to 391 (371 residues), 318.3 bits, see alignment E=1.9e-98 amino acids 487 to 1194 (708 residues), 694 bits, see alignment E=6.1e-212 PF05170: AsmA" amino acids 33 to 199 (167 residues), 41.6 bits, see alignment E=1.1e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1221 amino acids)

>LRK53_RS09495 DUF748 domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MNALRSMAGARLAAARDKARQLYRSHRARKATLIAAIVLVVFGLLGFFAAPPIIRGQIEK
RASAALSRSVTVAAVHFNPYTLRLQLDRLHIADRDGRSPFVDIDQAVINASWTSLFRQAP
VLDELRLQQPRIRIVRTADGRFNFTDLLERYAAKPAAPKTPPARFALSNIAVHAGDIQFD
DQLAKANHHVEQLELGIPFIANLPSDTDVFVQPLLSLRVDGSPLRIDGHTKPFADTREAV
VHFQLDQLDLPRYLAYVPVPLPVAVPKGRLSGNLDLHFVQTKPTPQLQLTGHLQLDDFAL
ASNHGEPILELGHGSAELADVQPLLSRYRLAALQLDQARLHYTQGAGGHSNFDSLTASPA
PPASTAKATPTDLRIASLALTNSAIRYTDATQHELAIDNLHGSLQGLSLQPAPAGRIDLA
ARLGGGELSAKGTLDLAAGRLAAQLGLNQVDVAPLQAMAPPMAARVTRGKLDADGQLQLD
WGKAVNVHLADAHAAVSDFALEAPSKEHGTPLTWGKLQAEIRLLDLANRQAQLGTVTASG
LSLDVQRQHNGAISLLELLAPPGAPRKAAADPGPPWHWSIAHLGLDGGAVDFTDQAVGSK
PATVQLKSLKGSLDDLDDKLGVARPFKLEGAIDGGSFTASGKLRPSPLGADLQLSTRQLD
IARFEPYISVPLNVTVSGARLTSNGKLYYDGRGSTPKLHYRGNAALERVRVQDKLTGDDF
LRWRTLSASNLDADIGQGAPRVRIGALALTSFYARMIINADGKLNLSDVVASPEAAPVSV
TRATGTPATPPPPPPKPATPAPAATTSAAVAAATTPAAPPADIHIGGITLVNGQLNYTDN
FIKPNYTANLTKLTGRIGAFGTTPGDPPAALSVQAALDDDSPVDIDGSINPLQPVAFLDI
KGKANEVELTRLAAYSTKYTGYPITAGKLSVDVHYMLDQRKLDADNHIFITQLSFGERNE
SPGIRHLPVKLAVALLKDTQGNIDVNVPVSGSLDDPQFSLGGMIWRAFGNLIAKAVTAPF
RLLAGAFGGSHEDLGYVEFAAGSAVLDAKAQERLGKIVAMLQQKPSLKLGIIGRVDPGKD
QDGLRKVTVDNLVRREKALDTEGKNADTSDAALAAVNVTPDEYEKYLKRAYRHDELQDKP
RNFLGLKKSLEPDEMRSLMETGVPVDAKAMRALAERRAAAVQAWLKGKLDDARVSLQEPK
LDAQGVDDQGKTTRVDFGLKQ