Protein Info for LRK53_RS08990 in Rhodanobacter sp000427505 FW510-R12

Annotation: NADH-quinone oxidoreductase subunit L

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 695 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 36 to 57 (22 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 123 to 140 (18 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 226 to 243 (18 residues), see Phobius details amino acids 264 to 282 (19 residues), see Phobius details amino acids 294 to 315 (22 residues), see Phobius details amino acids 322 to 344 (23 residues), see Phobius details amino acids 350 to 371 (22 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details amino acids 430 to 447 (18 residues), see Phobius details amino acids 510 to 531 (22 residues), see Phobius details amino acids 574 to 593 (20 residues), see Phobius details amino acids 672 to 693 (22 residues), see Phobius details TIGR01974: proton-translocating NADH-quinone oxidoreductase, chain L" amino acids 8 to 687 (680 residues), 756.6 bits, see alignment E=1.5e-231 PF00662: Proton_antipo_N" amino acids 74 to 124 (51 residues), 76 bits, see alignment 1.6e-25 PF00361: Proton_antipo_M" amino acids 140 to 426 (287 residues), 279 bits, see alignment E=4.5e-87

Best Hits

KEGG orthology group: K00341, NADH dehydrogenase I subunit L [EC: 1.6.5.3] (inferred from 65% identity to mep:MPQ_0718)

Predicted SEED Role

"NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)" in subsystem Respiratory Complex I (EC 1.6.5.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.3

Use Curated BLAST to search for 1.6.5.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (695 amino acids)

>LRK53_RS08990 NADH-quinone oxidoreductase subunit L (Rhodanobacter sp000427505 FW510-R12)
MGLSTSVLLTIALAPLLGSLVAGFVSPFLGRAGRAVAHSVTIACMIVSVALSFQVLYQLT
LGGAGNYNQNIYTWFQIGQVNASVGFMVDRLTAMMLVVVGFVSLVVHLYTIGYMRDDPGY
TRFFSYISLFTFSMFMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYKRPTAIFANLKAFLV
NRVGDFGFLLGIAAVLTFLHTLDYASAFSAAPGLAGQTLQITANTQWDAATVICILLFVG
AMGKSAQVPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFEMSSTALSFVLV
IGATTALFTGLIGIVQNDIKRVIAYSTLSQLGYMTVALGVSMYSGAVFHLMTHAFFKALL
FLGAGSVIIAMHHEQDMRYMGGLRKYMPVTWITMWIGSLALVAVPFTSGFYSKDAIIEAV
GLSHRWGANYAYFCVMAGVLVTGLYTFRQMYLTFHGKERFTVVAAHGNDHELASSDIVYD
VHVSADSHEDEHHSGGQPGVLHHPPKESPWVVTLPLILLAIPSLLIGYVTVGPMLFGNWF
GTAIHVNEANDVLAELGQEFHGAATMALHGFTQLPFLLVLVAFVICTYIYVFNPALADRI
KRALMPLWTVLDRKYWVDEVEYALFASGGQKMGRLFWKFSDAGVIDGVAVNGSVRLIHRG
AALMRRLQTGYLYHYAFAMIIGVIVLFGGYRLFGN