Protein Info for LRK53_RS08155 in Rhodanobacter sp000427505 FW510-R12

Annotation: CusA/CzcA family heavy metal efflux RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1049 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 346 to 363 (18 residues), see Phobius details amino acids 369 to 389 (21 residues), see Phobius details amino acids 397 to 418 (22 residues), see Phobius details amino acids 438 to 464 (27 residues), see Phobius details amino acids 481 to 508 (28 residues), see Phobius details amino acids 533 to 555 (23 residues), see Phobius details amino acids 881 to 900 (20 residues), see Phobius details amino acids 907 to 926 (20 residues), see Phobius details amino acids 933 to 957 (25 residues), see Phobius details amino acids 981 to 998 (18 residues), see Phobius details amino acids 1010 to 1034 (25 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 1 to 1042 (1042 residues), 1562.8 bits, see alignment E=0 PF00873: ACR_tran" amino acids 6 to 1036 (1031 residues), 1045.7 bits, see alignment E=0

Best Hits

Swiss-Prot: 61% identical to CZCA_ALCSC: Cation efflux system protein CzcA (czcA) from Alcaligenes sp. (strain CT14)

KEGG orthology group: K07239, heavy-metal exporter, HME family (inferred from 66% identity to aex:Astex_3856)

MetaCyc: 61% identical to cation efflux system protein (Pseudomonas putida KT2440)
RXN1G01-61; TRANS-RXN0-200; TRANS-RXN0-244

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1049 amino acids)

>LRK53_RS08155 CusA/CzcA family heavy metal efflux RND transporter (Rhodanobacter sp000427505 FW510-R12)
MLERLVRAAIAHRLLVLILALGLGALGAWNYSKLPIDAVPDITNVQVQINTEAPGYSPLE
AERRLSYPIETALAGLPHLQQTRSIARYGLSQITAVFEDGTDVYFARQQVAERLKEVGTQ
LPPGVQPTLGPVATGLGEIFMYMVEAAPAARRADGQPWTPTDLRSLQDWVIRPQLRNLAG
VTEVNTIGGFVRQFHVTPDPARLAAYGLSLVDVQQALERNNANVGAGYIERFGEQYLIRV
PGQIADLDGLREVVIGQKDGVALRVRDVAEVAEGEELRTGAATENGHEAVLGTVFMLIGE
NSRIVAQRVAAELKTINASLPDGVSARTVYDRTLLVDRAIGTVQKNLVEGALLVIAVLFL
LLGNLRAALITAAVIPLTMLMTISGMVGNGISGNLMSLGALDFGLIVDGAVIIVENCLRR
FGEAQHRLGRMLRREERFALAASATAEVIKPSLFGLFIIAAVYLPIFSLSGVEGKMFHPM
AFTVVIAITAAMALSLTFVPSAVAMFVTGRVAERENRVMLAVRRVYAPLLQRVMAWRIAV
VAAATVLVVAAGLLAGRLGAEFIPDLDEGDIAVHALRIPGTGLNQAIGMQVQLEARIKQF
PEVNHVFAKLGTADVATDPMPPSVADTYIIMKERKDWPDPRKPKTELVREMDAAVRAIPG
NNYEFTQPVQMRMNELIAGVRAEVAVKVFGDDLDTLVALGERVEQVAAGVAGAADVKQEQ
STGLPLLTIQPDRAALARYGLSVADLQDTVSIAMGGGPAGQVFEGDRRIDIVVRLPEAQR
SRLEALGSLPIPLPARADPSAPITVPLGEVARIELSTGPNQISRESGKRRVVVTANVRDR
DLGSFVAELRSAVAAGVTLPEGYWIDYGGTFEQLISASQRLQVVVPVVLLLIFGLLFMAF
GSARDAAVIFSGVPLALTGGVLALWLRGIPFSISAGVGFIALSGVAVLNGVVLVSFIRRL
LDEGHDLDSAIVEGALTRLRPVLMTALVASLGFVPMALNVGTGAEVQRPLATVVIGGILS
STLLTLLVLPALYRWVRGASEARRPVPAG