Protein Info for LRK53_RS08035 in Rhodanobacter sp000427505 FW510-R12

Annotation: Slp family lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 172 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF03843: Slp" amino acids 22 to 156 (135 residues), 126.1 bits, see alignment E=4.1e-41

Best Hits

KEGG orthology group: K07285, outer membrane lipoprotein (inferred from 41% identity to tgr:Tgr7_0668)

Predicted SEED Role

"Starvation lipoprotein Slp paralog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (172 amino acids)

>LRK53_RS08035 Slp family lipoprotein (Rhodanobacter sp000427505 FW510-R12)
MRIRLASQPIRLAAPAALLMLLAACAPPPIYKASGAAVTAAPFQVAQSPENFSNREVIWG
GRIVQVKVFADHSEIELLAYPLDASQRPKANDSGNGRFIAVMSGYVEPLDYPSGALMTVN
GKLNGSRAGKVGEADYVFPLVGVAQSHVWTTDEMNKGRNNVRFGVGVGVGIH