Protein Info for LRK53_RS07755 in Rhodanobacter sp000427505 FW510-R12

Annotation: SEL1-like repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 816 transmembrane" amino acids 501 to 519 (19 residues), see Phobius details amino acids 525 to 544 (20 residues), see Phobius details amino acids 577 to 596 (20 residues), see Phobius details PF08238: Sel1" amino acids 730 to 761 (32 residues), 22.2 bits, see alignment (E = 8.1e-09) amino acids 768 to 801 (34 residues), 24.2 bits, see alignment (E = 1.9e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (816 amino acids)

>LRK53_RS07755 SEL1-like repeat protein (Rhodanobacter sp000427505 FW510-R12)
MNIPVEPVSNTEATIDEAPGTERDGDAPPAADPMTAPTALVTEDTDSSGSTEHDDGSALA
KLRRLVRDRTRFDDTDVNGVNETCVAQGLTIDATHALEARLESVGITGRSQPTGKGAQPS
RSAITDAASDTGHRLNLGLDLLYTKLQNPATVYDELRDGLWLPAEAIHVELHRCSPCYGK
GRVTCYTCSGSCTEICYNCGGAGRTSCTWCSSTGKVMCTRCSGTSTVTVGSMEYYTEQVW
LGDRYDSQTKSRWVEKQVACNCSYGRVNCSYCVGQGRIGCVRCSTTGTITCRTCTGMGDL
VCEPCEGSGRVGTAAWVEVHHKVKYGQNWLSPIDQRANEIGRRADVHAIASESGGLALAE
LHRTKDGMSGAVLAGYRGELDVLHLDVTHGEQNYHVVAYGVNRQWLDLNHIIRDLLNGDL
EALRSALVSADTSGHAKARKERLTGPLRDVVESELNTALVEATLDGRSLVELHTLVSADY
AEKLKDALLSALKRIYDDVAMHTWWQMPLVCSLVALATWQLNHPYWAMLPAVCALPMSLG
LLHFQSSRVFESTLGDQARSDKALQYVRKAKHHRKGLWLHLLPSLLVLALSVVGAARQYT
ADRSSPVSSAPLARLGGDATLRQAMADCQSKTFAKARPALQRLAEQGNAQAYSCLAQALW
EKSRNEQGPSSTSDRLAARDWALRAVDALPEDTEALLLAGQLTTMANQSPANVAKGVAML
KRAAAKGNGEAMHTLGLMYIMGGQIPKDSTQARHWFTEAANTGRADDMYNLGLMDWRGEG
LPGPDKARARQWWNKAASHGDARARQALAQEGLDSH