Protein Info for LRK53_RS07660 in Rhodanobacter sp000427505 FW510-R12

Annotation: GNAT family N-acetyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 162 PF13302: Acetyltransf_3" amino acids 6 to 140 (135 residues), 29.4 bits, see alignment E=2.5e-10 PF00583: Acetyltransf_1" amino acids 37 to 139 (103 residues), 67.6 bits, see alignment E=2.5e-22 PF13673: Acetyltransf_10" amino acids 40 to 141 (102 residues), 30.5 bits, see alignment E=6.4e-11 PF13508: Acetyltransf_7" amino acids 54 to 140 (87 residues), 52.5 bits, see alignment E=1.1e-17

Best Hits

Swiss-Prot: 48% identical to YJGM_SALTY: Uncharacterized N-acetyltransferase YjgM (yjgM) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 69% identity to mxa:MXAN_6424)

MetaCyc: 48% identical to O-acetyl-serine N-acetyltransferase, OatA (Salmonella enterica enterica serovar Typhimurium str. LT2)
RXN1R65-39

Predicted SEED Role

"Histone acetyltransferase HPA2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (162 amino acids)

>LRK53_RS07660 GNAT family N-acetyltransferase (Rhodanobacter sp000427505 FW510-R12)
MANDYLIRRIEPSDNAAIAAIIRTVMPEFGADGPGFAIHDAEVDTMCEAYAQPRSSYFVV
ERDGAVIGGGGVAPLQNAEADVCELRKMYFLPAARGIGAGAAMMQRCLDAARTHGFQRCY
LETLTGMDAAQALYKRSGFTPLCAPLGGTGHFSCDRFFIREL