Protein Info for LRK53_RS06715 in Rhodanobacter sp000427505 FW510-R12

Annotation: [protein-PII] uridylyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 877 TIGR01693: protein-P-II uridylyltransferase" amino acids 39 to 872 (834 residues), 785.8 bits, see alignment E=3e-240 PF08335: GlnD_UR_UTase" amino acids 184 to 318 (135 residues), 127.8 bits, see alignment E=1.1e-40 PF27444: GlnD_3rd" amino acids 343 to 435 (93 residues), 58.5 bits, see alignment E=2.4e-19 PF01966: HD" amino acids 457 to 552 (96 residues), 42.9 bits, see alignment E=1.9e-14 PF27446: GlnD_5th" amino acids 626 to 675 (50 residues), 53.3 bits, see alignment 7.6e-18

Best Hits

Predicted SEED Role

"[Protein-PII] uridylyltransferase (EC 2.7.7.59)" in subsystem Ammonia assimilation (EC 2.7.7.59)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.7.59

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (877 amino acids)

>LRK53_RS06715 [protein-PII] uridylyltransferase (Rhodanobacter sp000427505 FW510-R12)
MSVVLPPLPRLPTAVPRSGVSAEARQALRQLLGDVDRVLATAFRDGADASALARRRGDSV
ARVVAHVWTACLGEVTGAALFAVGGFGRGLLFPYSDVDLLALVQAPEPARLRALEQFFAT
LWDVGLKVGHAVRDAAQCRTLAAQDASVFTSLLDARRLAGDAAFDARLKAIVDDPALWPA
PAYLSARLAERNARHARYDDTAYNLEPNLKDGPGGLRTLDSLRWMGRRLAHADDLADMVA
EGLLDPAEQAVLEQSEAVLRRYRYALHLEAGRPEERLLFDYQRALAARLGFEDEHAKNLG
VEQFMQGYYRAASQVERLGVQVAERFEEMLEPPEEAAPVGTDFVRYGKRLAAVDPQLFMR
RPAALVEIFIARMDQPGVVGFSADTMRRIHQATAARGDALADDGEVLAVFLRLLRRGAPA
VEALWRMNRHGLLAAILPAFGKVFGRMQYDLFHVYTVDEHTLRVLRNLARFADPAAQREF
PLGCEIWAGLPVPEVLLLAGLFHDIAKGRGGDHSVLGEQDARAFCSRLGLPPGDVEQVAW
LVRWHLLMSTTAQRQDITDPEVVHRFAQVVGSRERLGQLYLLTIADIIGTSPRLWNGWKD
RLLADLYTSTRYALRSDVELPRDIGARVRECSEYALALLLNEGHAEAEVARIWADFPQLS
FLRHRPEQIAWQTAAILRAHGALPLVAVHPLSVRGSTELFVYTPDRDGLFATITAVLDRL
RFSVVEARILSSPTGMALDTLLLLDADSQQPVSAARAEELQQRLQRALAQSAGVQPSKRG
MSRHQKHFQMAPQISFHAAGDRTQLALVGADRPGLLAAVAQVMLAIGVRVHDARIATFGE
RVEDFFQLTDCHDAPLDEVLQERLLQALQERIGPARN