Protein Info for LRK53_RS06630 in Rhodanobacter sp000427505 FW510-R12

Annotation: DNA polymerase III subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1231 TIGR00594: DNA polymerase III, alpha subunit" amino acids 5 to 1098 (1094 residues), 1227.7 bits, see alignment E=0 PF02811: PHP" amino acids 7 to 170 (164 residues), 134.8 bits, see alignment E=9.1e-43 PF07733: DNA_pol3_alpha" amino acids 290 to 566 (277 residues), 337.4 bits, see alignment E=1.7e-104 PF17657: DNA_pol3_finger" amino acids 643 to 787 (145 residues), 215.1 bits, see alignment E=9.9e-68 PF14579: HHH_6" amino acids 861 to 950 (90 residues), 99.2 bits, see alignment 3.2e-32 PF01336: tRNA_anti-codon" amino acids 1065 to 1136 (72 residues), 37.7 bits, see alignment 3.9e-13

Best Hits

Predicted SEED Role

"DNA polymerase III alpha subunit (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1231 amino acids)

>LRK53_RS06630 DNA polymerase III subunit alpha (Rhodanobacter sp000427505 FW510-R12)
MTVRYTHLHLHSEYSLVDSTIRIKALVTACVRDGIPAVALTDDSNMFALVKFYKACTAAG
IKPIGGCDLWISPADDPRPWRLTLLCQHREGYLNLSRLVSRAWQEGQHGGRALVEAGWLS
AGASSGLIALLGRESEVGRIALNQGAEAALARLRPLARLFPERLYLELTRCGREGEENWN
TAALALAAELGLPVLASNDVRFLTQDDFGAHEARVCIQQGRVLADPKRPREYSDQQYLKT
PDEMAALFADIPEALENTVELAKRCTLELKFGKYYLPDFPVPEGHDLDSHIRELARQGLK
ERLANAPLAADHTLADYQARLERELDVIVKMGFPGYFLIVADFINWGKQNGIPVGPGRGS
GAGSLVAWALKITDLDPLQFNLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVARKYGR
DRVSQIITYGSMAAKAVLRDSGRVLGFGYNQVDRIAKLIPARPLDLTLSCALGRSEKAKK
EPERVVKEFCELYEQDEEARALIDLALKLENLTRNAGKHAGGVVIAPSPLTDFAPLYCEA
GGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINARRAKERPHLPSGHLEPRP
SMASALRAAEAARDGNPAVSSLQAGEDNAEQPAAAASSMGEGPLDISQLPLDDAPTYELL
KKAQTVAVFQLESSGMQRMLKDAKPDRFEDIIALVALYRPGPMDLIPSFIARKHGREEVD
YPDPRVEPILKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKVEEMAKERAKF
REGAAKDGLSGEKADAIFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKTHYPAEFMAATI
SSDMDNTDKVVTFLDESRAIGIAVQPPDVNASEYMFVAIEPRTIQYGLGAIKGVGQGACE
AIVAERAHGRYTDLADFCRRVDPTKLNRRVLEALVLSGALDALAANRASLMLQLPDAIKA
AEQHLRDRQSGQNDMFGAAMGNATPVLKIELPTVPEWPLEQKLQGERDTLGHYLSGHPTD
PWKDELAQLSTCPLGEIADRYQPPKPRKNDHDDNNRFRRGPDTPWTVAGMVTAVRKRGDS
DAFVRLEDGSGLIEVSFFGELYQQIAPLLTRDEMLVVDGGLRIDEFSGGGFQLRARSACS
LADACRRHARLLQLKLNGIGPGFVEQLQHALAGYRGGRTSVTLHGYRNRHAQADFELGEA
WRVDAIPDLLRAVRALPGVKAARLRIVKQHD